Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	2226275	2226453	179	3 [1]	[1] 2	PP_1962	site‑specific recombinase

ATTTGTTATGAGATCCAAGTGCTCAGGAATCGCTGAAAGCCTATTGGGGCCCAATAGGTAAATTTCGATAAACCGATAGTCGTGAGATTTCGCTTTGGATGATACGAAGGAACGAATACGATTGAAGGGAGTAAATGCAGGG  >  NC_002947/2226152‑2226293                                                                                                                           |                    aTTTGTTATGAGATCCAAGTGCTCAGGAATCGCTGAAAGCCTATTGGGGCCCAATAGGTAAATTTCGATAAACCGATAGTCGTAAGATTTCGCTTTGGATGATACGAAGGAACGAATACGAtt                     >  1:239418/1‑123 (MQ=255) aTTTGTTATGAGATCCAAGTGCTCAGGAATCGCTGAAAGCCTATTGGGGCCCAATAGGTAAATTTCGATAAACCGATAGTCGTAAGATTTCGCTTTGGATGATACGAAGGAACGAATACGAtt                     <  2:239418/123‑1 (MQ=255)       tATGAGATCCAAGTGCTCAGGAATCGCTGAAAGCCTATTGGGGCCCAATAGGTAAATTTCGATAAACCGATAGTCGTGAGATTTCGCTTTGGATGATACGAAGGAACGAATACGATTGAAGGGAGTAAATGCAggg  <  2:193365/136‑1 (MQ=255)                                                                                                                           |                    ATTTGTTATGAGATCCAAGTGCTCAGGAATCGCTGAAAGCCTATTGGGGCCCAATAGGTAAATTTCGATAAACCGATAGTCGTGAGATTTCGCTTTGGATGATACGAAGGAACGAATACGATTGAAGGGAGTAAATGCAGGG  >  NC_002947/2226152‑2226293

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑