Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	5004754	5004917	164	2 [1]	[0] 2	PP_4409	site‑specific recombinase

GCAGCAACAAATGCGCGCAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCAT  >  NC_002947/5004918‑5005010 |                                                                                             gcagcaACAAATGCGCGCAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCAt  >  1:163056/1‑93 (MQ=255) gcagcaACAAATGCGCGCAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCAt  <  2:163056/93‑1 (MQ=255) |                                                                                             GCAGCAACAAATGCGCGCAATTCTGAAGCTGATCAAATACTGTGGCGCGACATAAACTTCACATCACGAGAAGTTTTTCTTGTCAACCCCCAT  >  NC_002947/5004918‑5005010

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑