Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	5005092	5005610	519	2 [1]	[0] 2	PP_4409	site‑specific recombinase

CATTAATCATGATAAACATGACCAAGGAGCTTATCGTCCTTGCCAGCAGCAGTCAATTATACGTACTGGTGCGTCAAGCCATCGAACTCATCACGAAGCTTTACGCATCAGCAGTAAAAAGTTTCAGAACGGCTTT  >  NC_002947/5005611‑5005746 |                                                                                                                                        cATTAATCATGATAAACATGACCAAGGAGCTTATCGTCCTTGCCAGCAGCAGTCAATTATACGTACTGGTGCGTCAAGCCATCGAACTCATCACGAAGCTTTACGCATCAGCAGTAAAAAGTTTCAGAACGGCttt  >  2:24466/1‑136 (MQ=255) cATTAATCATGATAAACATGACCAAGGAGCTTATCGTCCTTGCCAGCAGCAGTCAATTATACGTACTGGTGCGTCAAGCCATCGAACTCATCACGAAGCTTTACGCATCAGCAGTAAAAAGTTTCAGAACGGCttt  >  2:263190/1‑136 (MQ=255) |                                                                                                                                        CATTAATCATGATAAACATGACCAAGGAGCTTATCGTCCTTGCCAGCAGCAGTCAATTATACGTACTGGTGCGTCAAGCCATCGAACTCATCACGAAGCTTTACGCATCAGCAGTAAAAAGTTTCAGAACGGCTTT  >  NC_002947/5005611‑5005746

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑