Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	5629645	5629689	45	2 [1]	[1] 2	[rlmJ]	[rlmJ]

CCAGTCCATGCGGTAACTACCGGCGGTCTGTGCCAGCTCTTTGGCCAGCCATGGCAGCAGCTCCTTGAGTTCATCCTCCAGCCCCCATGGTGGGTTGGCAATGGCCAAGCCCGAACCATTCAGGCCCTGCGGGCTGTCCTGGTG  >  NC_002947/5629682‑5629825         |                                                                                                                                        ccAGTCCATGCGGTAACTACCGGCGGTCTGTGCCAGCTCTTTGGCCAGCCATGGCAGCAGCTCCTTGAGTTCATCCTCCAGCCCCCATGGTGGGTTGGCAATGGCCAAGCCCGAACCATTCAGGCCCTGCGGGCTg          <  2:228237/136‑1 (MQ=255)         tGCGGTAACTACCGGCGGTCTGTGCCAGCTCTTTGGCCAGCCATGGCAGCAGCTCCTTGAGTTCATCCTCCAGCCCCCATGGTGGGTTGGCAATGGCCAAGCCCGAACCATTCAGGCCCTGCGGGCTGTCCTGGTg  <  1:171941/136‑1 (MQ=255)         |                                                                                                                                        CCAGTCCATGCGGTAACTACCGGCGGTCTGTGCCAGCTCTTTGGCCAGCCATGGCAGCAGCTCCTTGAGTTCATCCTCCAGCCCCCATGGTGGGTTGGCAATGGCCAAGCCCGAACCATTCAGGCCCTGCGGGCTGTCCTGGTG  >  NC_002947/5629682‑5629825

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑