| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 735,787 | C→T | 36.4% | A185T (GCC→ACC) | PP_0628 ← | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 735,787 | 0 | C | T | 36.4% | 4.3 / 6.0 | 11 | A185T (GCC→ACC) | PP_0628 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (3/4); new base T (2/2); total (5/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.01e-01 | |||||||||||
GTGTACGCCATCGCAAACAGTCGCTGCACTGGATCAAAGACTGATGCCTACGTCGAAGACGATGCTGCGGCCCAGGTTGCCGCGCAGGAAATCCGGCGCATCGGGGTGGGCAAACAGTACCCGGGCAAAGGTTGGCCCGACCAGCGACAGCGAGCGCCAGCCCTGGCGCAGGTATTCGGTAGGCGGCGGGAAGTGGGTGTTGAGGTCGAGCACTTCGCGCTTGAGGCTGGAGAACGCGAT > NC_002947/735677‑735916 | gtgtACGCCATCGCAAACAGTCGCTGCACTGGATCAAAGACTGATGCCTACGTCGAAGACGATGCTGCGGCCCAGGTTGCCGCGCAGGAAATCCGGCGCATCGGGGTGGGCAAACAGTACCCGGGCAAAGGTTGGc < 1:263362/136‑1 (MQ=255) gtACGCCATCGCAAACAGTCGCTGCACTGGATCAAAGACTGATGCCTACGTCGAAGACGATGCTGCGGCCCAGGTTGCCGCGCAGGAAATCCGGCGCATCGGGGTGGGCAAACAg > 1:57336/1‑115 (MQ=255) gtACGCCATCGCAAACAGTCGCTGCACTGGATCAAAGACTGATGCCTACGTCGAAGACGATGCTGCGGCCCAGGTTGCCGCGCAGGAAATCCGGCGCATCGGGGTGGGCAAACAg < 2:57336/115‑1 (MQ=255) aCTGATGCCTACGTCGAAGACGATGCTGCGGCCCAGGTTGCCGCGCAGGAAATCCGGCGCATCGGGGTGGGTAAACAGTACCCGGGCAAAGGTTGGCCCGACCAGCGACAGCGAGCGCCAGccc > 1:268912/1‑124 (MQ=255) aCTGATGCCTACGTCGAAGACGATGCTGCGGCCCAGGTTGCCGCGCAGGAAATCCGGCGCATCGGGGTGGGTAAACAGTACCCGGGCAAAGGTTGGCCCGACCAGCGACAGCGAGCGCCAGccc > 1:268913/1‑124 (MQ=255) aCTGATGCCTACGTCGAAGACGATGCTGCGGCCCAGGTTGCCGCGCAGGAAATCCGGCGCATCGGGGTGGGTAAACAGTACCCGGGCAAAGGTTGGCCCGACCAGCGACAGCGAGCGCCAGccc < 2:268912/124‑1 (MQ=255) aCTGATGCCTACGTCGAAGACGATGCTGCGGCCCAGGTTGCCGCGCAGGAAATCCGGCGCATCGGGGTGGGTAAACAGTACCCGGGCAAAGGTTGGCCCGACCAGCGACAGCGAGCGCCAGccc < 2:268913/124‑1 (MQ=255) tGCCTACGTCGAAGACGATGCTGCGGCCCAGGTTGCCGCGCAGGAAATCCGGCGCATCGGGGTGGGCAAACAGTACCCGGGCAAAGGTTGGCCCGACCAGCGACAGCGAGCGCCAGCCCTgg < 1:270611/122‑1 (MQ=255) tGCCTACGTCGAAGACGATGCTGCGGCCCAGGTTGCCGCGCAGGAAATCCGGCGCATCGGGGTGGGCAAACAGTACCCGGGCAAAGGTTGGCCCGACCAGCGACAGCGAGCGCCAGCCCTgg > 2:270611/1‑122 (MQ=255) cTACGTCGAAGACGATGCTGCGGCCCAGGTTGCCGCGCAGGAAATCCGGCGCATCGGGGTGGGCAAACAGTACCCGGGCAAAGGTTGGCCCGACCAGCGACAGCGAGCGCCAGCCCTGGCGCAGGTATTCGGTAgg < 2:208384/136‑1 (MQ=255) ggTGGGCAAACAGTACCCGGGCAAAGGTTGGCCCGACCAGCGACAGCGAGCGCCAGCCCTGGCGCAGGTATTCGGTAGGCGGCGGGAAGTGGGTGTTGAGGTCGAGCACTTCGCGCTTGAGGCTGGAGAACGCgat > 1:4751/1‑136 (MQ=255) | GTGTACGCCATCGCAAACAGTCGCTGCACTGGATCAAAGACTGATGCCTACGTCGAAGACGATGCTGCGGCCCAGGTTGCCGCGCAGGAAATCCGGCGCATCGGGGTGGGCAAACAGTACCCGGGCAAAGGTTGGCCCGACCAGCGACAGCGAGCGCCAGCCCTGGCGCAGGTATTCGGTAGGCGGCGGGAAGTGGGTGTTGAGGTCGAGCACTTCGCGCTTGAGGCTGGAGAACGCGAT > NC_002947/735677‑735916 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |