| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 838,649 | T→C | 28.5% | R18G (AGA→GGA) | rplY ← | 50S ribosomal protein L25/general stress protein Ctc |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 838,649 | 0 | T | C | 28.5% | 16.2 / 4.8 | 14 | R18G (AGA→GGA) | rplY | 50S ribosomal protein L25/general stress protein Ctc |
| Reads supporting (aligned to +/- strand): ref base T (7/3); new base C (2/2); total (9/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.80e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ACTGGGCGTCCTGGTTACCACCGTAGACAACGGCTGGGATGTTCGCGGAGTGACGCAGGCGGCGGCTCGCACCTTTCCCCAGGTCAGTACGCGCTTGGGCGTTCAGAGTGAATTCAGTCATTTTGTTTCTCCAAAGTAGCCCCCCGAGGGCGTTTGCGACCAGCGCCAACGGGGATGGCAAAAAAGCCCCGCCCCAACACAGGTTGGGGCGGGGCGCTTCACATCAACACGTGTCCCGCTTAGCGGAACATCGCGCT > NC_002947/838520‑838776 | aCTGGGCGTCCTGGTTACCACCGTAGACAACGGCTGGGATGTTCGCGGAGTGACGCAGGCGGCGGCTCGCACCTTTCCCCAGGTCAGTACGCGCTTGGGCGTTCAGAGTGAATTCAGTCATTTTGTTTCTCCAAAg < 1:527/136‑1 (MQ=255) tGGTTACCACCGTAGACAACGGCTGGGATGTTCGCGGAGTGACGCAGGCGGCGGCTCGCACCTTTCCCCAGGTCAGTACGCGCTTGGGCGTTCAGAGTGAATTCAGTCATTTTGTTTCTCCAAAGTAGCCCCCCGa > 1:149868/1‑136 (MQ=255) accaccGTAGACAACGGCTGGGATGTTCGCGGAGTGACGCAGGCGGCGGCTCGCACCTTTCCCCAGGTCAGTACGCGCTTGGGCGTTCAGAGTGAATTCAGTCATTTTGTTTCTCCAAAGTAGCCCCCCGAGGGCg < 2:18845/136‑1 (MQ=255) cTGGGATGTTCGCGGAGTGACGCAGGCGGCGGCTCGCACCTTTCCCCAGGTCAGTACGCGCTTGGGCGTTCAGAGTGAATTCAGTCATTTTGTTTCCCCAAAGTAGCCCCCCGAGGGCGTTTGCGACCAGCGCCaa > 2:64206/1‑136 (MQ=255) cTGGGATGTTCGCGGAGTGACGCAGGCGGCGGCTCGCACCTTTCCCCAGGTCAGTACGCGCTTGGGCGTTCAGAGTGAATTCAGTCATTTTGTTTCCCCAAAGTAGCCCCCCGAGGGCGTTTGCGACCAGCGCCaa > 2:65491/1‑136 (MQ=255) tGACGCAGGCGGCGGCTCGCACCTTTCCCCAGGTCAGTACGCGCTTGGGCGTTCAGAGTGAATTCAGTCATTTTGTTTCTCCAAAGTAGCCCCCCGAGGGCGTTTGCGACCAGCGCCAACGGGGATGGCAAAAAAg < 2:249558/136‑1 (MQ=255) gcggcTCGCACCTTTCCCCAGGTCAGTACGCGCTTGGGCGTTCAGAGTGAATTCAGTCATTTTGTTTCTCCAAAGTAGCCCCCCGAGGGCGTTTGCGACCAGCGCCAACGGGGATGGCAAAAAAGCCCCGCCCCaa > 2:176484/1‑136 (MQ=255) aGTACGCGCTTGGGCGTTCAGAGTGAATTCAGTCATTTTGTTTCTCCAAAGTAGCCCCCCGAGGGCGTTTGCGACCAGCGCCAACGGGGATGGCAAAAAAGCCCCGCCCCAACACAGGTTGGGGCGGGGGGCTTca > 1:65526/1‑136 (MQ=255) gTTCAGAGTGAATTCAGTCATTTTGTTTCTCCAAAGTAGCCCCCCGAGGGCGTTTGCGACCAGCGCCAACGGGGATGGCAAAAAAGCCCCGCCCCAACACAGGTTGGGGCGGGGCGCTTCACCTCAACACGTGTcc > 1:181201/1‑136 (MQ=255) gTTCAGAGTGAATTCAGTCATTTTGTTTCTCCAAAGTAGCCCCCCGAGGGCGTTTGCGACCAGCGCCAACGGGGATGGCAAAAAAGCCCCGCCCCAACACAGGTTGGGGCGGGGCGCTTCACATCAACACGTGTcc > 1:30530/1‑136 (MQ=255) agagTGAATTCAGTCATTTTGTTTCTCCAAAGTAGCCCCCCGAGGGCGTTTGCGACCAGCGCCAACGGGGATGGCAAAAAAGCCCCGCCCCAACACAGGTTGGGGCGGGGCGCTTCACATCAACACGTGTCCCGCt > 1:119563/1‑136 (MQ=255) gagTGAATTCAGTCATTTTGTTTCTCCAAAGTAGCCCCCCGAGGGCGTTTGCGACCAGCGCCAACGGGGATGGCAAAAAAGCCCCGCCCCCACCCAGGTTGGGGCGGGGCGCATCACAAAAACACCGGTCCCGcat > 2:215816/1‑134 (MQ=255) tttGTTTCCCCAATGTTGCCCCCCGAGGGGGTTTGCGACCAGCGCCATCGGGGTTGGCAAAAACGCCCCGCCCCAACTCTGGTTGGGGGGGGGCGCTTCACATCAACACGTGTCCCGCTTAGCGGAACATCGCGCt < 1:65491/136‑1 (MQ=255) tttGTTTCCCCAAAGTAGCCCCCCGAGGGCTTTTGCGACCAGCGCCAACGGGTATGGCAAAAACGCCCCGCCCCAACACAGGTGGGGGCGGGGCGCTTCACATCAACACGTGTCCCGCTTAGCGGAACATCGCGCt < 1:64206/136‑1 (MQ=255) | ACTGGGCGTCCTGGTTACCACCGTAGACAACGGCTGGGATGTTCGCGGAGTGACGCAGGCGGCGGCTCGCACCTTTCCCCAGGTCAGTACGCGCTTGGGCGTTCAGAGTGAATTCAGTCATTTTGTTTCTCCAAAGTAGCCCCCCGAGGGCGTTTGCGACCAGCGCCAACGGGGATGGCAAAAAAGCCCCGCCCCAACACAGGTTGGGGCGGGGCGCTTCACATCAACACGTGTCCCGCTTAGCGGAACATCGCGCT > NC_002947/838520‑838776 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |