| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,584,970 | G→A | 17.4% | T29I (ACC→ATC) | PP_1388 ← | EmrB/QacA family drug resistance transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,584,970 | 0 | G | A | 17.4% | 52.7 / 3.6 | 23 | T29I (ACC→ATC) | PP_1388 | EmrB/QacA family drug resistance transporter |
| Reads supporting (aligned to +/- strand): ref base G (8/11); new base A (2/2); total (10/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCCGTAGATCGGCACGGCCACGGTCATGGCCACCATATAACCGGAGATGACCCAGGCCAGCAGGCCGACATCGCTGAACTGCGCCGAGATGGCGGGCAGCGAGACAGCGACGATGGTCTGGTCCAGTGCGCCGAGGAAGATGGCCAGCATCAGGGCGGTGAGCACGTTGCGCAGGGCGGTGGGGGGCAGGGCGGCGGTCACGGGAATACCTTGTTTTGTCTATGGCGGCCCTTCGCGGGCAAGCCT > NC_002947/1584855‑1585100 | gCCGTAGATCGGCACGGCCACGGTCATGGCCACCATATAACCGGAGATGACCCAGGCCAGCAGGCCGACATCGCTGAACTGCGCCGAGATGGCGGGCAGCGAGACAGCGACGATGGTCTGGTCCAGTGCGCCGAgg > 2:215507/1‑136 (MQ=255)gCCGTAGATCGGCACGGCCACGGTCATGGCCACCATATAACCGGAGATGACCCAGGCCAGCAGGCCGACATCGCTGAACTGCGCCGAGATGGCGGGCAGCGAGACAGCGACGATGATCTGGTCCAGTGCGCCGAgg > 2:16627/1‑136 (MQ=255)gCCGTAGATCGGCACGGCCACGGTCATGGCCACCATATAACCGGAGATGACCCAGGCCAGCAGGCCGACATCGCTGAACTGCGCCGAGATGGCGGGCAGCGAGACAGCGACGATGATCTGGTCCAGTGCGCCGAgg > 2:15269/1‑136 (MQ=255) aGATCGGCACGGCCACGGTCATGGCCACCATATAACCGGAGATGACCCAGGCCAGCAGGCCGACATCGCTGAACTGCGCCGAGATGGCGGGCAGCGAGACAGCGACGATGGTCTGGTCCAGTGCGCCGAGGAAGAt < 1:48189/136‑1 (MQ=255) cACGGCCACGGTCATGGCCACCATATAACCGGAGATGACCCAGGCCAGCAGGCCGACATCGCTGAACTGCGCCGAGATGGCGGGCAGCGAGACAGCGACGATGGTCTGGTCCAGTGCGCCGAGGAAGATGGCCAGc > 1:94312/1‑136 (MQ=255) gTCATGGCCACCATATAACCGGAGATGACCCAGGCCAGCAGGCCGACATCGCTGAACTGCGCCGAGATGGCGGGCAGCGAGACAGCGACGATGGTCTGGTCCAGTGCGCCGAGGAAGATGGCCAGCATCAGGGCgg < 1:73070/136‑1 (MQ=255) tataACCGGAGATGACCCAGGCCAGCAGGCCGACATCGCTGAACTGCGCCGAGATGGCGGGCAGCGAGACAGCGACGATGGTCTGGTCCAGTGCGCCGAGGAAGATGGCCAGCATCAGGGCGGTGAGCACGTTgcg < 1:215507/136‑1 (MQ=255) ataACCGGAGATGACCCAGGCCAGCAGGCCGACATCGCTGAACTGCGCCGAGATGGCGGGCAGCGAGACAGCGACGATGGTCTGGTCCAGTGCGCCGAGGAAGATGGCCAGCATCAGGGCGGTGAGCACGTTgcgc > 1:70430/1‑136 (MQ=255) agaTGACCCAGGCCAGCAGGCCGACATCGCTGAACTGCGCCGAGATGGCGGGCAGCGAGACAGCGACGATGGTCTGGTCCAGTGCGCCGAGGAAGATGGCCAGCATCAGGGCGGTGAGCACGTTGCGCAGGGCGGt < 2:268117/136‑1 (MQ=255) aTGACCCAGGCCAGCAGGCCGACATCGCTGAACTGCGCCGAGATGGCGGGCAGCGAGACAGCGACGATGGTCTGGTCCAGTGCGCCGAGGAAGATGGCCAGCATCAGGGCGGTGAGCACGTTGCGCAGGGCGGTgg > 1:61738/1‑136 (MQ=255) agcagGCCGACATCGCTGAACTGCGCCGAGATGGCGGGCAGCGAGACAGCGACGATGGTCTGGTCCAGTGCGCCGAGGAAGATGGCCAGCATCAGGGCGGTGAGCACGTTGCGCAGGGCGGTGGGGGGCAGggcgg > 1:174392/1‑136 (MQ=255) agcagGCCGACATCGCTGAACTGCGCCGAGATGGCGGGCAGCGAGACAGCGACGATGGTCTGGTCCAGTGCGCCGAGGAAGATGGCCAGCATCAGGGCGGTGAGCACGTTGCGCAGGGCGGTGGGGGGCAGggcgg > 1:175815/1‑136 (MQ=255) gCCGACATCGCTGAACTGCGCCGAGATGGCGGGCAGCGAGACAGCGACGATGGTCTGGTCCAGTGCGCCGAGGAAGATGGCCAGCATCAGGGCGGTGAGCACGtt > 2:190605/1‑105 (MQ=255) gCCGACATCGCTGAACTGCGCCGAGATGGCGGGCAGCGAGACAGCGACGATGGTCTGGTCCAGTGCGCCGAGGAAGATGGCCAGCATCAGGGCGGTGAGCACGtt < 1:190605/105‑1 (MQ=255) gACATCGCTGAACTGCGCCGAGATGGCGGGCAGCGAGACAGCGACGATGGTCTGGTCCAGTGCGCCGAGGAAGATGGCCAGCATCAGGGCGGTGAGCACGTTGCGCAGGGCGGTGGGGGGCAGGGCGGCGGTCACg < 2:175815/136‑1 (MQ=255) gACATCGCTGAACTGCGCCGAGATGGCGGGCAGCGAGACAGCGACGATGGTCTGGTCCAGTGCGCCGAGGAAGATGGCCAGCATCAGGGCGGTGAGCACGTTGCGCAGGGCGGTGGGGGGCAGGGCGGCGGTCACg < 2:174392/136‑1 (MQ=255) cATCGCTGAACTGCGCCGAGATGGCGGGCAGCGAGACAGCGACGATGGTCTGGTCCAGTGCGCCGAGGAAGATGGCCAGCATCAGGGCGGTGAGCACGTTGCGCAGGGCGGTGGGGGGCAGGGCGGCGGTCACggg > 1:230993/1‑136 (MQ=255) tCGCTGAACTGCGCCGAGATGGCGGGCAGCGAGACAGCGACGATGGTCTGGTCCAGTGCGCCGAGGAAGATGGCCAGCATCAGGGCGGTGAGCACGTTGCGCAGGGCGGTGGGGGGCAGGGCGGCGGTCACGGGaa < 2:94312/136‑1 (MQ=255) gaTGGCGGGCTGCGAGACAGCGACGATGGTCTGGTCCAGTGCGCCGAGGAAGATGGCCAGCATCAGGGCGGTGAGCACGTTGCGCAGGGCGGTGGGGGGCAGGGCGGCGGTCACGGGAATACCTTGTTTTGTCTAt < 1:262141/136‑1 (MQ=255) gaTGGCGGGCAGCGAGACAGCGACGATGGTCTGGTCCAGTGCGCCGAGGAAGATGGCCAGCATCAGGGCGGTGAGCACGTTGCGCAGGGCGGTGGGGGGCAGGGCGGCGGTCACGGGAATACCTTGTTTTGTCTAt < 1:58255/136‑1 (MQ=255) ggagggCAGCGAGACAGCGACGATGATCTGGTCCAGTGCGCCGTGGAAGATGGCCAGCATCAGGGCGGTGAGCACGTTGCGCAGGGCGGTGGGGGGCAGGGCGGCGGTCACGGGAATACCTTGTTTTGTCTATggc < 1:15269/133‑1 (MQ=255) ggCGGGCAGCGAGACAGCGACGATGATCTGGTCCAGTGCGCCGTGGAAGATGGCCAGCATCAGGGCGGTGAGCACGTTGCGCAGGGCGGTGGGGGGCAGGGCGGCGGTCACGGGAATACCTTGTTTTGTCTATggc < 1:16627/136‑1 (MQ=255) cgaTGGTCTGGGCCAGTGCGCCGAGGAAGATGGCCAGCATCAGGGCGGTGAGCACGTTGCGCAGGGCGGTGGGGGGCAGGGCGGCGGTCACGGGAATACCTTGTTTTGTCTATGGCGGCCCTTCGCGGGCAAGCCt < 2:151909/136‑1 (MQ=255) | GCCGTAGATCGGCACGGCCACGGTCATGGCCACCATATAACCGGAGATGACCCAGGCCAGCAGGCCGACATCGCTGAACTGCGCCGAGATGGCGGGCAGCGAGACAGCGACGATGGTCTGGTCCAGTGCGCCGAGGAAGATGGCCAGCATCAGGGCGGTGAGCACGTTGCGCAGGGCGGTGGGGGGCAGGGCGGCGGTCACGGGAATACCTTGTTTTGTCTATGGCGGCCCTTCGCGGGCAAGCCT > NC_002947/1584855‑1585100 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |