| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,889,983 | C→A | 23.6% | G111V (GGC→GTC) | PP_1695 ← | sodium‑solute symporter/two‑component system sensor histidine kinase/response regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,889,983 | 0 | C | A | 23.6% | 32.2 / 6.5 | 17 | G111V (GGC→GTC) | PP_1695 | sodium‑solute symporter/two‑component system sensor histidine kinase/response regulator |
| Reads supporting (aligned to +/- strand): ref base C (7/6); new base A (2/2); total (9/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.64e-01 | |||||||||||
TGCCGGTGGCGTCGGCGTTGGCGCCGATCAGCAGGTTCACGCCCAGTACGATGCCCTTGAGCTGCAAGGCGATGTACGGCAGCACACCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGATGGGCAGGAACG > NC_002947/1889849‑1890112 | tGCCGGTGGCGTCGGCGTTGGCGCCGATCAGCAGGTTCACGCCCAGTACGATGCCCTTGAGCTGCAAGGCGATGTACGGCAGCACACCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGcc > 1:75430/1‑136 (MQ=255) cGATCAGCAGGTTCACGCCCAGTACGATGCCCTTGAGCTGCAAGGCGATGTACGGCAGCACACCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGc < 1:136394/136‑1 (MQ=255) cGATCAGCAGGTTCACGCCCAGTACGATGCCCTTGAGCTGCAAGGCGATGTACGGCAGCACACCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGc < 1:212904/136‑1 (MQ=255) cagGTTCACGCCCAGTACGATGCCCTTGAGCTGCAAGGCGATGTACGGCAGCACACCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAg < 1:80712/136‑1 (MQ=255) aCGATGCCCTTGAGCTGCAAGGCGATGTACGGCAGCACACCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGACGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTgctgct > 2:61925/1‑136 (MQ=255) aCGATGCCCTTGAGCTGCAAGGCGATGTACGGCAGCACACCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGACGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTgctgct > 2:60633/1‑136 (MQ=255) ccTTGAGCTGCAAGGCGATGTACGGCAGCACACCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGAt > 1:19426/1‑136 (MQ=255) ttGAGCTGCAAGGCGATGTACGGCAGCACACCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCa < 1:894/136‑1 (MQ=255) gAGCTGCAAGGCGATGTACGGCAGCACACCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGc < 2:48137/136‑1 (MQ=255) aGCTGCAAGGCGATGTACGGCAGCACACCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGcc > 1:157406/1‑135 (MQ=255) aGCTGCAAGGCGATGTACGGCAGCACACCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCa > 1:212556/1‑136 (MQ=255) ggCGATGTACGGCAGCACACCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCGGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCAtcttc > 1:173941/1‑136 (MQ=255) acCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCg > 2:130885/1‑136 (MQ=255) cacTGCCAGGGTCTGCGACTTGACGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAgg < 1:60633/136‑1 (MQ=255) cacTGCCAGGGTCTGCGACTTGACGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAgg < 1:61925/136‑1 (MQ=255) cAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGATg > 2:153512/1‑136 (MQ=255) gTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGATGGGCa < 2:5688/136‑1 (MQ=255) gACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGATGGGCAGGAACg > 1:61540/1‑136 (MQ=255) | TGCCGGTGGCGTCGGCGTTGGCGCCGATCAGCAGGTTCACGCCCAGTACGATGCCCTTGAGCTGCAAGGCGATGTACGGCAGCACACCGACCAGGCAGATCAGTGCCACCACCACTGCCAGGGTCTGCGACTTGCCGTAGCGCGCGGCAATGAAGTCGGCGATCGAGGTGATGTTCTGCTGCTTGCTGATCAGCACCATCTTCTGCAGCACCCAAGGGGCGAAGATCAGCAGCAGTACCGGGCCCAGGTAGATGGGCAGGAACG > NC_002947/1889849‑1890112 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |