| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,112,373 | C→T | 26.6% | G1293D (GGC→GAC) | PP_1882 ← | membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,112,373 | 0 | C | T | 26.6% | 23.3 / 3.6 | 15 | G1293D (GGC→GAC) | PP_1882 | membrane protein |
| Reads supporting (aligned to +/- strand): ref base C (7/4); new base T (2/2); total (9/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGTGCCGCTCGCCATAGGCGGTATAACGGACGGCGCGCGTGCTGCCGGCCTGGCTCTCGGCGATCACGCTGTGGCTGGCACTGGTGTGCAGCAGCAGGGGCGATTGCGCACCAGTGCCTTTCTGCTGCTGGCCCAGCGCCTGCTCGTCATGATGCAGGTACAGGGTTTGCAGGCTGTCACGCACGGCCATGCGCAAACGCTGGCCGTCATGCAGCAGCAGCGTGCGCTCGCCGGCCTCGGGCCTGCTGACCAGCAAGCCG > NC_002947/2112242‑2112501 | cGTGCCGCTCGCCATAGGCGGTATAACGGACGGCGCGCGTGCTGCCGGCCTGGCTCTCGGCGATCACGCTGTGGCTGGCACTGGTGTGCAGCAGCAGGGGCGATTGCGCACCAGTGCCTTTCTGCTGCTGGTCCAg > 2:215113/1‑136 (MQ=255)cGTGCCGCTCGCCATAGGCGGTATAACGGACGGCGCGCGTGCTGCCGGCCTGGCTCTCGGCGATCACGCTGTGGCTGGCACTGGTGTGCAGCAGCAGGGGCGATTGCGCACCAGTGCCTTTCTGCTGCTGGTCCAg > 2:216318/1‑136 (MQ=255) cGCTCGCCATAGGCGGTATAACGGACGGCGCGCGTGCTGCCGGCCTGGCTCTCGGCGATCACGCTGTGGCTGGCACTGGTGTGCAGCAGCAGGGGCGATTGCGCACCAGTGCCTTTCTGCTGCTGGCCCAGCGCCt < 1:134447/136‑1 (MQ=255) aTAGGCGGTATAACGGACGGCGCGCGTGCTGCCGGCCTGGCTCTCGGCGATCACGCTGTGGCTGGCACTGGTGTGCAGCAGCAGGGGCGATTGCGCACCAGTGCCTTTCTGCTGCTGGCCCAGCGCCTGCTCGTCa > 2:70362/1‑136 (MQ=255) aGGCGGTATAACGGACGGCGCGCGGGCTGCCGGCCTGGCTCTCGGCGATCACGCTGTGGCTGGCACTGGTGTGCAGCAGCAGGGGCGATTGCGCACCAGTGCCTTTCTGCTGCTGGCCCAGCGCCTGCTCGTCatg < 1:121472/136‑1 (MQ=255) acggacggCGCGCGTGCTGCCGGCCTGGCTCTCGGCGATCACGCTGTGGCTGGCACTGGTGTGCAGCAGCAGGGGCGATTGCGCACCAGTGCCTTTCTGCTGCTGGCCCAGCGCCTGCTCGTCATGATGCAGGttc > 1:18912/1‑134 (MQ=255) cggCGCGCGTGCTGCCGGCCTGGCTCTCGGCGATCTCGCTGTGGCTGGCACTGGTGTGCAGCAGCAGGGGCGATTGCGCACCAGTGCCTTTCTGCTGCTGGCCCAGCGCCTGCTCGTCATGATGCAGGTACAGGGt < 1:210255/136‑1 (MQ=255) aTCACGCTGTGGCTGGCACTGGTGTGCAGCAGCAGGGGCGATTGCGCACCAGTGCCTTTCTGCTGCTGGCCCAGCGCCTGCTCGTCATGATGCAGGTACAGGGTTTGCAGGCTGTCACGCACGGCCATGCGCAAAc < 2:246195/136‑1 (MQ=255) aCTGGTGTGCAGCAGCAGGGGCGATTGCGCACCAGTGCCTTTCTGCTGCTGGCCCAGCGCCTGCTCGTCATGATGCAGGTACAGGGTTTGCAGGCTGTCACGCACGGCCATGCGCAAACGCTGGCCGTCATgcagc > 1:116662/1‑136 (MQ=255) tgtgCAGCAGCAGGGGCGATTGCGCACCAGTGCCTTTCTGCTGCTGGCCCAGCGCCTGCTCGTCATGATGCAGGTACAGGGTTTGCAGGCTGTCACGCACGGCCATGCGCAAACGCTGGCCGTCATGcagcagcag > 2:147482/1‑136 (MQ=255) cagGGGCGATTGCGCACCAGTGCCTTTCTGCTGCTGGCCCAGCGCCTGCTCGTCATGATGCAGGTACAGGGTTTGCAGGCTGTCACGCACGGCCATGCGCAAACGCTGGCCGTCATGCAGCAGCAGCGTGCGCTCg > 2:153254/1‑136 (MQ=255) ggggCGATTGCGCACCAGTGCCTTTCTGCTGCTGGCCCAGCGCCTGCTCGTCATGATGCAGGTACAGGGTTTGCAGGCTGTCACGCACGGCCATGCGCAAACGCTGGCCGTCATGCAGCAGCAGCGTGCGCTCGcc > 2:169530/1‑136 (MQ=255) cAGTGCCTTTCTGCTGCTGGCCCAGCGCCTGCTCGTCATGATGCAGGTACAGGGTTTGCAGGCTGTCACGCACGGCCATGCGCAAACGCTGGCCGTCATGCAGCAGCAGCGTGCGCTCGCCGGCCTCGGGCctgct > 2:157466/1‑136 (MQ=255) ctgctgGTCCAGCGCCTGCTCGTCATGATGCAGGTACAGGGTTTGCAGGCTGTCACGCACGGCCATGCGCAAACGCTGGCCGTCATGCAGCAGCAGCGTGCGCTCGCCGGCCTCGGGCCTGCTGACCAGCAAgccg < 1:215113/136‑1 (MQ=255) ctgctgGTCCAGCGCCTGCTCGTCATGATGCAGGTACAGGGTTTGCAGGCTGTCACGCACGGCCATGCGCAAACGCTGGCCGTCATGCAGCAGCAGCGTGCGCTCGCCGGCCTCGGGCCTGCTGACCAGCAAgccg < 1:216318/136‑1 (MQ=255) | CGTGCCGCTCGCCATAGGCGGTATAACGGACGGCGCGCGTGCTGCCGGCCTGGCTCTCGGCGATCACGCTGTGGCTGGCACTGGTGTGCAGCAGCAGGGGCGATTGCGCACCAGTGCCTTTCTGCTGCTGGCCCAGCGCCTGCTCGTCATGATGCAGGTACAGGGTTTGCAGGCTGTCACGCACGGCCATGCGCAAACGCTGGCCGTCATGCAGCAGCAGCGTGCGCTCGCCGGCCTCGGGCCTGCTGACCAGCAAGCCG > NC_002947/2112242‑2112501 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |