New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4810146	0 (0.000)	29 (0.760)	11/224	1.0	49.6%	intergenic (‑288/‑267)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	= 5990927	59 (1.550)					intergenic (+243/‑303)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA

ATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4809997‑4810146 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTGCCAGGCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCGCGTC  <  NC_002947/5990927‑5990800                                                                                                                                                                                                                                                                                        ATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTTGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATC                                                                                                                                                <  2:107169/136‑1             GCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCc                                                                                                                                    >  1:69857/1‑135             GCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCG                                                                                                                                    >  1:399535/1‑136             GCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCG                                                                                                                                    >  1:577305/1‑136             GCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCG                                                                                                                                    >  1:394208/1‑136             GCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCG                                                                                                                                    >  1:1041044/1‑136             GCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCG                                                                                                                                    >  2:90017/1‑136             GCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGAGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCG                                                                                                                                    >  1:41812/1‑136                    TCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCG                                                                                                                             >  1:143205/1‑136                     gGCGCTTTGGGGGTTAGCTGTTGGGCGTTTGGTTTTCAGCGCGTGGTAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGTGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGC                                                                                                                            <  2:402384/135‑1                     gGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGC                                                                                                                            <  1:784433/135‑1                              GCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGT                                                                                                                   <  1:447867/136‑1                                      GTGTTTGGCGGGTGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGC                                                                                                           <  1:236065/136‑1                                              CGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACcg                                                                                                   >  1:606441/1‑134                                                    GTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTT                                                                                             >  1:496673/1‑136                                                    GTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTT                                                                                             <  1:1166451/136‑1                                                    GTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTT                                                                                             <  1:90017/136‑1                                                     TTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC                                                                                            <  1:14666/136‑1                                                               ggggtAGGTGTTCGCGGGGGGTTTTTCAGGGCCTGGGTGGTGTTCGCGGGGAGAGTTTCAGCGCCTGTGAGATCGAGCGCGGCCGGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCC                                                                                 <  2:606441/131‑1                                                               ggGGGAGGTGTTGGCCGGGGGATTTTCAGCGCCTGGGTGGTGTTCGCGGGGTGTGTTTCCGCGCCTGGGAGATCGAGCGCCGCCCGCGGGGGGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCC                                                                                 <  1:841260/134‑1                                                               gTGGGAGGTGTTCGCCGGTGTTTTTTCAGCGCCTGGGAGGTGTTCGCGGGGATAGTTTCAGCGCCTGGGATATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCC                                                                                 <  1:883654/135‑1                                                               gTGGGAGGTGTTCGCCGGGGGATTTTCTGCGCCTGGGAGGTGTGCGCCGGGTGTGTTTCTGCGCCTGTGAGATCGTGCGCGGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCC                                                                                 <  2:991070/135‑1                                                               gTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCC                                                                                 <  2:592206/135‑1                                                               CTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCC                                                                                 <  1:281178/136‑1                                                               CTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCC                                                                                 <  1:325189/136‑1                                                               CTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCC                                                                                 <  1:915410/136‑1                                                               CTGGGAGGTGTTCGCCGGGGGATTTTCAGCACCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCC                                                                                 <  2:655722/136‑1                                                                                             GCCTGGGTGGTGTTCGCCGGGAGTGTTTCAGCGCGTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGACCGCCTTG                                                    <  2:394208/136‑1                                                                                             GCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGATATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGTGATTTGCGCGCGACCGCCTTG                                                    <  2:598449/136‑1                                                                                                           CGCCGGGAGAGTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCC                                                                                 >  1:579237/1‑92                                                                                                           CGCCGGGAGAGTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCC                                                                                 <  2:579237/92‑1                                                                                                                              CCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCTCCTGCACCAGTCGCGCGCG                                                             >  2:1089015/1‑93                                                                                                                              CCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCTCCTGCACCAGTCGCGCGCG                                                             <  1:1089015/93‑1                                                                                                                              CCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGT                                                                                               >  1:590538/1‑60                                                                                                                              CCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGT                                                                                               <  2:590538/60‑1                                                                                                                                TGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCC                                                                                 <  2:72074/71‑1                                                                                                                                TGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCC                                                                                 >  1:72074/1‑71                                                                                                                                     gattggGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATCCCTCCTGTGCCAGGCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCG            <  2:81193/130‑1                                                                                                                                              CCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTGCCAGGCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCGCGT   <  2:716161/136‑1                                                                                                                                              CCGCCCGCGCGGCGCGTCGCGGGTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTGCCAGGCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCGCGT   <  1:1080076/136‑1                                                                                                                                               gGCCCGCGCGGGGCTTCGCGGGTAATCCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTGCCAGGCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCGCGTC  <  1:1058780/135‑1                                                                                                                                               CGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCTTGTGCCAGGCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCATGCGCGTC  <  2:41976/136‑1                                                                                                                                               CGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTGCCAGGCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCGCGTC  <  2:1127124/136‑1                                                                                                                                               CGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTGCCAGGCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCGCGTC  <  1:934714/136‑1                                                                                                                                               CGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTGCCAGGCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCGCGTC  <  1:655516/136‑1                                                                                                                                                    GCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC                                                                                            <  2:631085/41‑1                                                                                                                                                    GCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC                                                                                            >  1:631085/1‑41                                                                                                                                                                                                                                                                                        ATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4809997‑4810146 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagatcgagcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTGCCAGGCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCGCGTC  <  NC_002947/5990927‑5990800

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.