New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1617825 =	19 (0.420)	5 (0.130)	3/234	2.5	25.1%	intergenic (‑38/+135)	PP_1417/PP_1418	tricarboxylate transport protein TctB/tricarboxylate transport protein TctC
	?	NC_002947	1617914 =	13 (0.330)					intergenic (‑127/+46)	PP_1417/PP_1418	tricarboxylate transport protein TctB/tricarboxylate transport protein TctC

GGCCATCACGGCCAGGGCGGCACACATCGCCAGCAGGGCCAAGGCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATCG  >  NC_002947/1617695‑1617883                                                                                                                                   |                                                           accggcgaagagctggacggctatgtgaagaagcaagtggctgactacaaggcgctggccaaggaattcggcctgatccagtaagcctgtcggactcaccaccactcctgtgggagcggccttgtgtcggGATCgg                                                       >  2:869284‑M1/131‑136 (MQ=255)   ccaTCACGGCCAGGGCGGCACACATCGCCAGCAGGGCCAAGGCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGgc                                                     >  2:405432/1‑136 (MQ=255)      cgaagagctggacggctatgtgaagaagcaagtggctgactacaaggcgctggccaaggaattcggcctgatccagtaagcctgtcggactcaccaccactcctgtgggagcggccttgtgtcggGATCGGGcgcg                                                  >  1:211877‑M1/126‑136 (MQ=255)       gaagagctggacggctatgtgaagaagcaagtggctgactacaaggcgctggccaaggaattcggcctgatccagtaagcctgtcggactcaccaccactcctgtgggagcggccttgcgtcgcGATCGGGCGCGa                                                 >  2:96771‑M1/125‑136 (MQ=255)        aagagctggacggctatgtgaagaagcaagtggctgactacaaggcgctggccaaggaattcggcctgatccagtaagcctgtcggactcaccaccactcctgtgggagcggccttgtgtcggGATCGGGCGCGaa                                                >  1:1080114‑M1/124‑136 (MQ=255)            gctggacggctatgtgaagaagcaagtggctgactacaaggcgctggccaaggaattcggcctgatccagtaagcctgtcggactcaccaccactcctgtgggagcggccttgtgtcggGATCGGGCGCGAAGCTg                                            >  1:42803‑M1/120‑136 (MQ=255)                ggcggcACACATCGCCAGCAGGGCCAAGGCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGc                                        <  1:1001288/136‑1 (MQ=255)                          aTCGCCAGCAGGGCCAAGGCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGcc                              <  2:395571/136‑1 (MQ=255)                               cagcagGGCCAAGGCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGGTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGc                         <  1:627655/136‑1 (MQ=255)                               cagcagGGCCAAGGCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAAc                                   <  2:933719/126‑1 (MQ=255)                               cagcagGGCCAAGGCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAAc                                   >  1:933719/1‑126 (MQ=255)                               cagcagGGCCAAGGCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGc                         <  1:1109918/136‑1 (MQ=255)                               cagcagGGCCAAGGCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGCTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGc                         <  1:1121290/136‑1 (MQ=255)                                          aGGCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGa              <  1:405432/136‑1 (MQ=255)                                          aGGCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGa              <  2:1016356/136‑1 (MQ=255)                                                aaaTGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATc        <  1:463210/136‑1 (MQ=255)                                                   tGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTa     >  1:290234/1‑136 (MQ=255)                                                    gCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTAt    <  2:290234/136‑1 (MQ=255)                                                    ccgctggccaaggaattcggcctgatccagtaagcctgtcggactcaccaccactcctgtgggagcggccttgtgtcggGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTAt    >  1:930490‑M1/80‑136 (MQ=255)                                                     cgctggccaaggaattcggcctgatccagtaagcctgtcggactcaccaccactcctgtgggagcggccttgtgtcggGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATc   >  1:1077366‑M1/79‑136 (MQ=255)                                                      gTTGAAGGATCATTGTGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATCg  <  1:710990/136‑1 (MQ=255)                                                      gTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATCg  <  2:236447/136‑1 (MQ=255)                                                      gTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATCg  <  1:617183/136‑1 (MQ=255)                                                      gTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATCg  <  1:111456/136‑1 (MQ=255)                                                                             tccagtaagcctgtcggactcaccaccactcctgtgggagcggccttgcgtcgcGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATCg  >  1:631964‑M1/55‑113 (MQ=255)                                                                             tccagtaagcctgtcggactcaccaccactcctgtgggagcggccttgcgtcgcGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATCg  <  2:631964‑M1/59‑1 (MQ=255)                                                                                                                 ggAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATCg  >  2:287414/1‑77 (MQ=255)                                                                                                                 ggAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATCg  <  1:287414/77‑1 (MQ=255)                                                                                                                                   |                                                           GGCCATCACGGCCAGGGCGGCACACATCGCCAGCAGGGCCAAGGCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATCG  >  NC_002947/1617695‑1617883

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.