| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,148,793 | 0 | A | C | 47.8% | ‑5.3 / 10.3 | 23 | V153G (GTC→GGC) | PP_1007 | transmembrane sensor |
| Reads supporting (aligned to +/- strand): ref base A (7/5); new base C (8/3); total (15/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.67e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AGTAAGCCTCGCCCTGTAGCAGGCGGGCGACCTGGCGGCCGTCCTGGCGTTCGCTGGCGAATGCCGAATTGGTGTTGAGCAGCACTTTTGCGCCGTCTTCCAGTTGCAGGCGCTGGCGCTCG‑CCGA‑CCACCGTAAGGTGGTCGGCCTGCAGGCG‑CATGGGCAGGTTACCGACGGTGAATAGCCCGACCAGCAGCAGCGCTGCGGTGGCCAGGGGTTTCCAGTGACTGCGCAGGCGCCCGCGCCATGACCTGCGTT > NC_002947/1148668‑1148922 | aGTAAGCCTCGCCCTGTAGCAGGCGGGCGACCTGGCGGCCGTCCTGGCGTTCGCTGGCGAATGCCGAATTGGTGTTGAGCAGCACTTTTGCGCCGTCTTCCAGTTGCAGGCGCTGGCGCTCG‑CCGC‑CCCCCCTAAg > 2:1060433/1‑136 (MQ=255) tCGCCCTGTAGCAGGCGGGCGACCTGGCGGCCGTCCTGGCGTTCGCTGGCGAATGCCGAATTGGTGTTGAGCAGCACTTTTGCGCCGTCTTCCAGTTGCAGGCGCTGGCGCTCG‑CCGA‑CCCCCCTAAGGTGGTccg > 1:436751/1‑134 (MQ=255) cccTGTCCCCGGCGGGCGACGGGGCGGCCGGCCGGGGGTTCGGTGGCTAATGCCTAATTGGGGTTGCCCACCAGTTTTGCGCCGTCTCCCAGTGCCCGGCGCGGGCGCTCG‑CCGA‑CCACCGTATGGGGGGCGGCCt < 2:591535/136‑1 (MQ=255) ccTGTAGCAGGCGGGCGACCTGGCGGCCGTCCTGGCGTTCGCTGGCGATTGCCGAATTGGTGTTGAGCAGCACTTTTGCGCCGTCTTCCAGTTGCAGGCGCTGGCGCTCG‑CCCC‑CCCCCGTAAGGTGGTCGGccgg > 1:763161/1‑134 (MQ=255) ccTGTAGCAGGCGGGCGACCTGGCGGCCGTCCTGGCGTTCGCTGGCGAATGCCGAATTGGTGTTGAGCAGCACTTTTGCGCCGTCTTCCAGTTGCAGGCGCTGGCGCTCG‑CCCC‑CCACCCGAATGTGGGGGGccag > 1:796063/1‑134 (MQ=255) cAGGCGGGCGACCTGGCGGCCGTCCTGGCGTTCGCTGGCGAATGCCTAATTGGTGTTGAGCAGCACTTTTGCGCCGTCTTCCAGTTGCAGGCGCTGGCGCTCG‑CCCACCCCCCGTAA‑GTGGTGGGCCCGCCggggg > 1:808260/1‑133 (MQ=255) gggcgACCTGGCGGCCGTCCTGGCGTTCGCTGGCGAATGCCGAATTGGTGTTGAGCAGCACTTTTGCGCCGTCTTCCAGTTGCAGGCGCTGGCGCTCG‑CCGA‑CCCCCGTAAGGTGGTCGGCCGGGAGGGG‑CATggg > 1:1087367/1‑136 (MQ=255) ggcgACCTGGCGGCCGTCCTGGCGTTCGCTGGCGAATGCCGAATTGGTGTTGAGCAGCACTTTTGCGCCGTCTTCCAGTTGCAGGCGCTGGCGCTCGCCCTC‑CCACCG‑AAACTGGTAGGGCGGCACGCG‑CATgggg > 2:122743/1‑135 (MQ=255) aCCTGGCGGCCGTCCTGGCGTTCGCTGGCGAATGCCGAATTGGTGTTGAGCAGCACTTTTGCGCCGTCTTCCAGTTGCAGGCGCTGGCGCTCG‑CCGC‑CCCCCCGAAGGTGGGGGGCCGGCCGGCG‑CCAGGGCCggg > 1:351627/1‑135 (MQ=255) aCCTGGCGGCCGTCCTGGCGTTCGCTGGCGAATGCCGAATTGGTGTTGAGCAGCACTTTTGCGCCGTCTTCCAGTTGCAGGCGCTGGCGCTCG‑CCGA‑CCACCGTAAGGTGGTCGGCCTGCAGGCG‑CATGGGCAGGt > 2:764174/1‑136 (MQ=255) tGGCGGCCGTCCTGGCGTTCGCTGGCGAATGCCGAATTGGTGTTGAGCAGCACTTTTGCGCCGTCTTCCAGTTGCAGGCGCTGGCGCTCG‑CCGC‑CCCCCGTAAGGTGGTCGGCCTGCCGGCG‑CCTGGGCAGGTTaa > 2:1037678/1‑135 (MQ=255) ttGAGCAGCACTTTTGCGCCGTCTTCCAGTTGCAGGCGCTGGCGCTCG‑CCGA‑CCACCGTAAGGTGGTCGGCCTGGAGGCG‑CATGGGGAGGTTTCCGACGGTGAATAGCCCGCCCCCCAGCCGCGCTGCGGTgggcc > 1:584675/1‑133 (MQ=255) agttttGCGCCGTCTCCCTGTTCCGGGGGTTGGCGGGGG‑CCGA‑CCACCTTACGGTGGTCGGCCTGCAGGCG‑CATGGGCAGGTTACCGACGGTGAATAGCCCGACCAGCAGCAGCGCTGCGGTGGCCAGGGGTTTcc < 2:1090230/134‑1 (MQ=255) ttttGCGCCGTCTTCCAGTTGCAGGCGCTGGCGCTCG‑CCGC‑CCACCGTTAGGTGGTCGGCCTGCAGGCG‑CATGGGCAGGGTTCCGACGGGGAATAGCCCGACCCGCAGCAGCGCTGCGGGGGCCAGGGGGTTccgg > 2:1003911/1‑134 (MQ=255) tCTTCCAGTTGCAGGCGCTGGCGCTCG‑CCGC‑CCCCCCGAAGGTGGTGGGGCGGGAGGCGCCAGGGGCGGGTT‑CCGCCGGGGGATAGCCCCCCCCCCCGCAGCGCGGGGGGGGGCCGGGGGTTGCACTGGCTgggcc > 2:15517/1‑135 (MQ=255) tCCAGTTGCAGGCGCTGGCGCTCG‑CCGA‑CCACCGTAAGGTGGTAGGCCTGCAGGCG‑CATGGGCAGGTTACCGACGGTGAATAGCCCGACcagcagca > 1:751345/1‑97 (MQ=255) tCCAGTTGCAGGCGCTGGCGCTCG‑CCGA‑CCACCGTAAGGTGGTAGGCCTGCAGGCG‑CATGGGCAGGTTACCGACGGTGAATAGCCCGACcagcagca < 2:751345/97‑1 (MQ=255) gcccggcgcgggcgccCC‑CCGC‑CCACCGAATGGGGGGCGGCCTGCAGGCG‑CATGGGCAGGTTACCGACGGTGAATAGCCCGACCAGCAGCAGCGCTGCGGTGGCCAGGGGTTTCCAGTGACTGCGCAGGCGCCcgc < 2:915519/132‑1 (MQ=255) ggcgctggcgctCG‑CCGA‑CCACCGGAAGGTGGTAGGCCAGCAGGCG‑CATGGGGAGGTTAACGACGGGGAATATCCCCACCACCCGCAACGCAGGGGTGGGCACGGGTTTTCAGTGACTGCGCAcgcgcccgcgccc > 2:102319/1‑135 (MQ=255) cgcggccgcgcg‑CCCC‑CCCCCGTAGGGGGGCCGGCCTGCAGGCG‑CATGGGCAGGTTACCGACGGTGAATAGCCCGACCAGCAGCAGCGCTGCGGTGGCCAGGGGTTTCCAGTGACTGCGCAGGCGCCCGCGCCATg < 2:1025592/130‑1 (MQ=255) gggcgctCG‑CCGA‑CCCACTTACGGGGGTGGGCCGGCAGGCG‑CATGGGCAGGTTACCGACGGTGAATAGCCCGACCAGCAGCAGCGCTGCGGTGGCCAGGGGTTTCCAGTGACTGCGCAGGCGCCCGCGCCATGAcc < 2:598077/135‑1 (MQ=255) gcgccCG‑CCCC‑CCCCCGTAGGGGGGGCGGCCTGCAGGCG‑CATGGGCAGGTTACCGACGGTGAATAGCCCGACCAGCAGTAGCGCTGCGGTGGCCAGGGGTTTCCAGTGACTGCGCAGGCGCCCGCGCCATGACCTg < 2:409934/136‑1 (MQ=255) gcG‑CCGA‑CCCCCGTACGGTGGGCGGCCTGCAGGCG‑CATGGGCAGGTTACCGACGGTGAATAGCCCGACCAGCAGCAGCGCTGCGGTGGCCAGGGGTTTCCAGTGACTGCGCAGGCGCCCGCGCCATGACCTGCGtt < 2:914573/135‑1 (MQ=255) | AGTAAGCCTCGCCCTGTAGCAGGCGGGCGACCTGGCGGCCGTCCTGGCGTTCGCTGGCGAATGCCGAATTGGTGTTGAGCAGCACTTTTGCGCCGTCTTCCAGTTGCAGGCGCTGGCGCTCG‑CCGA‑CCACCGTAAGGTGGTCGGCCTGCAGGCG‑CATGGGCAGGTTACCGACGGTGAATAGCCCGACCAGCAGCAGCGCTGCGGTGGCCAGGGGTTTCCAGTGACTGCGCAGGCGCCCGCGCCATGACCTGCGTT > NC_002947/1148668‑1148922 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |