Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_002947	1,680,017	T→G	T276P (ACC→CCC)	PP_1475 ←	CAIB/BAIF family protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	1,680,017	0	T	G	100.0%	164.3 / NA	44	T276P (ACC→CCC)	PP_1475	CAIB/BAIF family protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base G (21/23);  total (21/23)

ATACGGCTGGCCGGCACTTCGGCAGTGGTCAGCACCTGCATCAGTTGCTCCAGTGGCAGGCTGTTGGCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGTCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGTCGGCGCTTGTGTGGATGGAGGAGGGCGTGAT  >  NC_002947/1679884‑1680140                                                                                                                                      |                                                                                                                            aTACGGCTGGCCGGCACTTCGGCAGTGGTCAGCACCTGCATCAGTTGCTCCAGTGGCAGGCTGTTGGCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAggggcg                                                                                                                           >  2:859849/1‑136 (MQ=255) aTACGGCTGGCCGGCACTTCGGCAGTGGTCAGCACCTGCATCAGTTGCTCCAGTGGCAGGCTGTTGGCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAggggcg                                                                                                                           >  2:1150564/1‑136 (MQ=255)    cGGCTGGCCGGCACTTCGGCAGTGGTCAGCACCTGCATCAGTTGCTCCAGTGGCAGGCTGTTTGCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAggggcgggt                                                                                                                        >  1:842536/1‑136 (MQ=255)    cGGCTGGCCGGCACTTCGGCAGTGGTCAGCACCTGCATCAGTTGCTCCAGTGGCAGGCTGTTGGCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAggggcgggt                                                                                                                        >  1:919166/1‑136 (MQ=255)         ggCCGGCACTTCGGCAGTGGTCAGCACCTGCATCAGTTGCTCCAGTGGCAGGCTGTTGGCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTg                                                                                                                   >  2:947847/1‑136 (MQ=255)         ggCCGGCACTTCGGCAGTGGTCAGCACCTGCATCAGTTGCTCCAGTGGCAGGCTGTTGGCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGGCGTTGCTGGCCAGGGGCGGGTCGTTg                                                                                                                   <  1:278365/136‑1 (MQ=255)            gggCACTTCGGCAGTGGTCAGCACCTGCATCAGTTGCTCCAGTGGCAGGCTGTTGGCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCg                                                                                                                <  1:224996/135‑1 (MQ=255)             ggCACTTCGGCAGTGGTCAGCACCTGCATCAGTTGCTCCAGTGGCAGGCTGTTGGCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGa                                                                                                               >  2:546918/1‑136 (MQ=255)                            gTCAGCACCTGCATCAGTTGCTCCAGTGGCAGGCTGTTGGCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGa                                                                                                <  2:1072542/136‑1 (MQ=255)                               aGCACCTGCATCAGTTGCTCCAGTGGCAGGCTGTTGGCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATgg                                                                                             >  1:915171/1‑136 (MQ=255)                               aGCACCTGCATCAGTTGCTCCAGTGGCAGGCTGTTGGCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATgg                                                                                             >  2:617693/1‑136 (MQ=255)                                  aCCTGCATCAGTTGCTCCAGTGGCAGGCTGTTGGCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCt                                                                                          >  2:133960/1‑136 (MQ=255)                                       cATCAGTTGCTCCAGTGGCAGGCTGTTGGCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATg                                                                                     <  1:5579/136‑1 (MQ=255)                                          cAGTTGCTCCAGTGGCAGGCTGTTGGCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAg                                                                                  <  2:1068821/136‑1 (MQ=255)                                              tGCTCCAGTGGCAGGCTGTTGGCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCt                                                                              >  1:38433/1‑136 (MQ=255)                                               gCTCCAGTGGCAGGCTGTTGGCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCtt                                                                             <  1:1150564/136‑1 (MQ=255)                                               gCTCCAGTGGCAGGCTGTTGGCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCtt                                                                             <  1:859849/136‑1 (MQ=255)                                                     gTGGCAGGCTGTTGGCCCAGCGGTCGATCACCCCATACAGCTCGTAACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGAt                                                                       >  1:1152514/1‑136 (MQ=255)                                                        gCAGGCTGTTGGCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGc                                                                    <  1:379970/136‑1 (MQ=255)                                                                  tgCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTg                                                          <  2:842536/135‑1 (MQ=255)                                                                  ggCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTg                                                          <  2:919166/136‑1 (MQ=255)                                                                   gCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTgg                                                         >  1:747157/1‑136 (MQ=255)                                                                     cctgCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGgcg                                                       <  1:666629/133‑1 (MQ=255)                                                                     ccAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGgcg                                                       <  1:546918/136‑1 (MQ=255)                                                                         cGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGa                                                   >  1:970073/1‑136 (MQ=255)                                                                           gTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGCTGGCCGGCAAGAAGCGCTTGAAGAAGGCATCACCGTTGGCGcccaaa                                                 >  1:1144132/1‑132 (MQ=255)                                                                            tCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCt                                                <  2:446904/136‑1 (MQ=255)                                                                            tCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCt                                                <  1:479904/136‑1 (MQ=255)                                                                                             cTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGTCg                               <  2:425149/136‑1 (MQ=255)                                                                                               cGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCTTGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGTCGgc                             >  1:441107/1‑136 (MQ=255)                                                                                                gTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGCCCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGTCGgcg                            >  1:649133/1‑136 (MQ=255)                                                                                                gTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGc                                        >  1:282765/1‑124 (MQ=255)                                                                                                gTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGc                                        <  2:282765/124‑1 (MQ=255)                                                                                                gTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGTCGgcg                            >  1:893477/1‑136 (MQ=255)                                                                                                gTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGTCGgcg                            >  1:800579/1‑136 (MQ=255)                                                                                                gTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGTCGgcg                            >  1:794660/1‑136 (MQ=255)                                                                                                gTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGTCGgcg                            >  1:582558/1‑136 (MQ=255)                                                                                                gTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGTCGgcg                            >  2:576687/1‑136 (MQ=255)                                                                                                gTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGAGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGTCGgcg                            >  1:860676/1‑136 (MQ=255)                                                                                                  cACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGTCGGCGCt                          <  2:699671/136‑1 (MQ=255)                                                                                                  cACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGTCGGCGCt                          <  1:576687/136‑1 (MQ=255)                                                                                                  cACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGTCGGCGCt                          <  2:970073/136‑1 (MQ=255)                                                                                                   acgacgCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGTCGGCGCtt                         >  1:511491/1‑136 (MQ=255)                                                                                                        gCAGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGTCGGCGCTtgtgtg                    <  2:414676/136‑1 (MQ=255)                                                                                                          aGGTCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGTCGGCGCTTGTGtgga                  >  1:277363/1‑136 (MQ=255)                                                                                                             tCGCGGCCGTCGTTGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCAGTCGGCGCTTGTGtggatgg               <  1:1035249/136‑1 (MQ=255)                                                                                                                          tGCTGGCCAGGGGCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGTCGGCGCTTGTGTGGATGGAGGAGGGCGTGAt  <  2:746157/136‑1 (MQ=255)                                                                                                                          accgggCCCGGGGCGGGTGGTTGGCTAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGTCGGCGCTTGTGTGGATGGAGGAGGGCGTGAt  <  1:156244/132‑1 (MQ=255)                                                                                                                                      |                                                                                                                            ATACGGCTGGCCGGCACTTCGGCAGTGGTCAGCACCTGCATCAGTTGCTCCAGTGGCAGGCTGTTGGCCCAGCGGTCGATCACCCCATACAGCTCGTCACGACGCAGGTCGCGGCCGTCGTTGCTGGCCAGGGTCGGGTCGTTGGCGAGGTCATCGCGACCGATGGCCTGCATGAAGCGCTTGAAGATGGCATCACCGTTGGCGCCGATCTGCACATGCTTGCCGTCGGCGCTTGTGTGGATGGAGGAGGGCGTGAT  >  NC_002947/1679884‑1680140

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑