| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,762,606 | C→G | 25.0% | L38L (CTG→CTC) | PP_5055 ← | Sulfurtransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,762,606 | 0 | C | G | 25.0% | 25.4 / 7.0 | 16 | L38L (CTG→CTC) | PP_5055 | Sulfurtransferase |
| Reads supporting (aligned to +/- strand): ref base C (7/5); new base G (2/2); total (9/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.59e-01 | |||||||||||
CCGCGCCGACGATATGACCGGCGGAGTATTCCTTGGCCGGGCGAATGTCGATCACCAGGGCCTTCTCGGCATTGACCAGGGCTGTCAGTTGGCCGTTGGTCAGGCTTTGGCCACCACGACGGATTTCATTGATGAGCAGCAGGACCAGCAGAATGAGGAAGATCGCAACCAGGATGTAGTGATCTGTCGCGAATTGAATCAGGTGAGCAACCATCAGCGGTGT > NC_002947/5762506‑5762728 | ccGCGCCGACGATATGACCGGCGGAGTATTCCTTGGCCGGGCGAATGTCGATCACCAGGGCCTTCTCGGCATTGACCAGGGCTGTCAGTTGGCCGTTGGTCAGGCTTTGGCCACCACGACGGATTTCATTGATGag < 1:334290/136‑1 (MQ=255) cgcgCCGACGATATGACCGGCGGAGTATTCCTTGGCCGGGCGAATGTCGATCACCAGGGCCTTCTCGGCATTGACCAGGGCTGTCAGTTGGCCGTTGGTCAGGCTTTGGCCACCACGACGGATTTCATTGATGagc < 1:109035/136‑1 (MQ=255) cgcgCCGACGATATGACCGGCGGAGTATTCCTTGGCCGGGCGAATGTCGATCACCAGGGCCTTCTCGGCATTGACCAGGGCTGTCAGTTGGCCGTTGGTCAGGCTTTGGCCACCACGACGGATTTCATTGATGagc < 1:183655/136‑1 (MQ=255) ggCGAATGTCGATCACCAGGGCCTTCTCGGCATTGACCAGGGCTGTCAGTTGGCCGTTGGTCAGGCTTTGGCCACCACGACGGATTTCATTGATGAGCAGCAGGACCAGCAGAATGAGGaa < 1:170950/121‑1 (MQ=255) ggCGAATGTCGATCACCAGGGCCTTCTCGGCATTGACCAGGGCTGTCAGTTGGCCGTTGGTCAGGCTTTGGCCACCACGACGGATTTCATTGATGAGCAGCAGGACCAGCAGAATGAGGaa > 2:170950/1‑121 (MQ=255) gAATGTCGATCACCAGGGCCTTCTCGGCATTGACCAGGGCTGTCAGTTGGCCGTTGGTCAGGCTTTGGCCACCACGACGGATTTCATTGATGAGCAGCAGGACCAGCAGAATGAGGAAGATCGCAACCAGGATGTa > 2:498272/1‑136 (MQ=255) aCCAGGGCCTTCTCGGCATTGACCAGGGCTGTCAGTTGGCCGTTGGTCAGGCTTTGGCCACCACGACGGATTTCATTGATGAGCAGCAGGACCAGCAGAATGAGGAAGATCGCAACCAGGATGTAGTGATCTGTcg > 2:459179/1‑136 (MQ=255) ggCCTTCTCGGCATTGACCAGGGCTGTCAGTTGGCCGTTGGTCAGGCTTTGGCCACCACGACGGATTTCATTGATGAGCAGCAGGACCAGCAGAATGAGGAAGATCg < 1:383708/107‑1 (MQ=255) ggCCTTCTCGGCATTGACCAGGGCTGTCAGTTGGCCGTTGGTCAGGCTTTGGCCACCACGACGGATTTCATTGATGAGCAGCAGGACCAGCAGAATGAGGAAGATCg > 2:383708/1‑107 (MQ=255) aGGGCTGTCAGTTGGCCGTTGGTGAGGCTTTGGCCACCACGACGGATTTCATTGATGAGCAGCAGGACCAGCAGAATGAGGAAGATCGCAAcc < 1:354450/93‑1 (MQ=255) aGGGCTGTCAGTTGGCCGTTGGTGAGGCTTTGGCCACCACGACGGATTTCATTGATGAGCAGCAGGACCAGCAGAATGAGGAAGATCGCAAcc < 1:357170/93‑1 (MQ=255) aGGGCTGTCAGTTGGCCGTTGGTGAGGCTTTGGCCACCACGACGGATTTCATTGATGAGCAGCAGGACCAGCAGAATGAGGAAGATCGCAAcc > 2:354450/1‑93 (MQ=255) aGGGCTGTCAGTTGGCCGTTGGTGAGGCTTTGGCCACCACGACGGATTTCATTGATGAGCAGCAGGACCAGCAGAATGAGGAAGATCGCAAcc > 2:357170/1‑93 (MQ=255) aGGGCTGTCAGTTGGCCGTTGGTCAGGCTTTGGCCACCACGACGGATTTCATTGATGAGCAGCAGGACCAGCAGAATGAGGAAGATCGCAACCAGGATGTAGTGATCTGTCGCGAATTGAATCAGGTGAGCAACCa > 1:109447/1‑136 (MQ=255) aGGGCTGTCAGTTGGCCGTTGGTCAGGCTTTGGCCACCACGACGGATTTCATTGATGAGCAGCAGGACCAGCAGAATGAGGAAGATCGCAACCAGGATGTAGTGATCTGTCGCGAATTGAATCAGGTGAGCAACCa > 2:237019/1‑136 (MQ=255) gTTGGCCGTTGGTCAGGCTTTGGCCACCACGACGGATTTCATTGATGAGCAGCAGGACCAGCAGAATGAGGAAGATCGCAACCAGGATGTAGTGATCTGTCGCGAATTGAATCAGGTGAGCAACCATCAGCGgtgt > 1:102151/1‑136 (MQ=255) | CCGCGCCGACGATATGACCGGCGGAGTATTCCTTGGCCGGGCGAATGTCGATCACCAGGGCCTTCTCGGCATTGACCAGGGCTGTCAGTTGGCCGTTGGTCAGGCTTTGGCCACCACGACGGATTTCATTGATGAGCAGCAGGACCAGCAGAATGAGGAAGATCGCAACCAGGATGTAGTGATCTGTCGCGAATTGAATCAGGTGAGCAACCATCAGCGGTGT > NC_002947/5762506‑5762728 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |