| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,276,928 | T→A | 17.4% | F241I (TTC→ATC) | eamA → | O‑acetylserine/cysteine export transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,276,928 | 0 | T | A | 17.4% | 43.9 / 2.6 | 22 | F241I (TTC→ATC) | eamA | O‑acetylserine/cysteine export transporter |
| Reads supporting (aligned to +/- strand): ref base T (9/9); new base A (2/2); total (11/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01 | |||||||||||
GGCCATGCCTTGGCCAATATCAGTTGGAGTTCGGTGCTGGCCCTGGCGTATTTGGCCTTTGTGGCCACCATGCTCGGCTACAGCCTGTGGAGCAAGTTGCTGTCGCGTCACCCGGCAGGCAAAGTGGCGCCGTTCTCGCTGCTGGTACCGGTGATTGGCCTGAGTTCGTCGGCGTTGCTGCTGGGAGAGCGCCTGACCGCTACGCAGGGCTGGGGCGCATTGCTGGTGATGGCCGGCCTGCTGGTGAATGTATTCGGTGCGC > NC_002947/3276796‑3277057 | ggCCATGCCTTGGCCAATATCAGTTGGAGTTCGGTGCTGGCCCTGGCGTATTTGGCCTTTGTGGCCACCATGCTCGGCTACAGCCTGTGGAGCAAGTTGCTGTCGCGTCACCCGGCAGGCAAAGTGGCGCCGAtct > 1:327637/1‑136 (MQ=255)ggCCATGCCTTGGCCAATATCAGTTGGAGTTCGGTGCTGGCCCTGGCGTATTTGGCCTTTGTGGCCACCATGCTCGGCTACAGCCTGTGGAGCAAGTTGCTGTCGCGTCACCCGGCAGGCAAAGTGGCGCCGAtct > 1:330305/1‑136 (MQ=255) cATGCCTTGGCCAATATCAGTTGGAGTTCGGTGCTGGCCCTGGCGTATTTGGCCTTTGTGGCCACCATGCTCGGCTACAGCCTGTGGAGCAAGTTGCTGTCGCGTCACCCGGCAGGCAAAGTGGCGCCGTTCTCgc < 1:50954/136‑1 (MQ=255) tGCCTTGGCCAATATCAGTTGGAGTTCGGTGCTGGCCCTGGCGTATTTGGCCTTTGTGGCCACCATGCTCGGCTACAGCCTGTGGAGCAAGTTGCTGTCGCGTCACCCGGCAGGCAAAGTGGCGCCGTTCTCgctg < 2:467784/136‑1 (MQ=255) gCCTTGGCCAATATCAGTTGGAGTTCGGTGCTGGCCCTGGCGTATTTGGCCTTTGTGGCCACCATGCTCGGCTACAGCCTGTGGAGCAAGTTGCTGTCGCGTCACCCGGCAGGCAAAGTGGCGCCGTTCTCgctgc > 1:137807/1‑136 (MQ=255) ttGGCCAATATCAGTTGGAGTTCGGTGCTGGCCCTGGCGTATTTGGCCTTTGTGGCCACCATGCTCGGCTACAGCCTGTGGAGCAAGTTGCTGTCGCGTCACCCGGCAGGCAAAGTGGCGCCGTTCTCGCTGCTgg > 1:415861/1‑136 (MQ=255) tGGCCAATATCAGTTGGAGTTCGGTGCTGGCCCTGGCGTATTTGGCCTTTGTGGCCACCATGCTCGGCTACAGCCTGTGGAGCAAGTTGCTGTCGCGTCACCCGGCAGGCAAAGTGGCGCCGTTCTCGCTGCTGGt > 2:249211/1‑136 (MQ=255) cAATATCAGTTGGAGTTCGGTGCTGGCCCTGGCGTATTTGGCCTTTGTGGCCACCATGCTCGGCTACAGCCTGTGGAGCAAGTTGCTGTCGCGTCACCCGGCAGGCAAAGTGGCGCCGTTCTCGCTGCTGGTACCg > 1:122930/1‑136 (MQ=255) cTGGCCCTGGCGTATTTGGCCTTTGTGGCCACCATGCTCGGCTACAGCCTGTGGAGCAAGTTGCTGTCGCGTCACCCGGCAGGCAAAGTGGCGCCGTTCTCGCTGCTGGTAACGGTGATTGGCCTGAGTTCGTCgg > 1:412471/1‑136 (MQ=255) tttGTGGCCACCATGCTCGGCTACAGCCTGTGGAGCAAGTTGCTGTCGCGTCACCCGGCAGGCAAAGTGGCGCCGTTCTCGCTGCTGGTACCGGTGATTGGCCTGAGTTCGTCGGCGTTGCTGCTGGGAGAGCGcc < 2:122930/136‑1 (MQ=255) ggCCACCATGCTCGGCTACAGCCTGTGGAGCAAGTTGCTGTCGCATCACCCGGCAGGCAAAGTGGCGCCGTTCTCGCTGCTGGTACCGGTGATTGGCCTGAGTTCGTCGGCGTTGCTGCTGGGAGAGCGCCTGAcc > 1:413297/1‑136 (MQ=255) tACAGCCTGTGGAGCAAGTTGCTGTCGCGTCACCCGGCAGGCAAAGTGGCGCCGTTCTCGCTGCTGGTACCGGTGATTGGCCTGAGTTCGTCGGCGTTGCTGCTGGGAGAGCGCCTGACCGCTACGCAGGGCTggg < 2:115637/136‑1 (MQ=255) aGCAAGTTGCTGTCGCGTCACCCGGCAGGCAAAGTGGCGCCGTTCTCGCTGCTGGTACCGGTGATTGGCCTGAGTTCGTCGGCGTTGCTGCTGGGAGAGCGCCTGACCGCTACGCAGGGCTGGGGCGCATTGCTgg > 2:469860/1‑136 (MQ=255) aGCAAGTTGCTGTCGCGTCACCCGGCAGGCAAAGTGGCGCCGTTCTCGCTGCTGGTACCGGTGATTGGCCTGAGTTCGTCGGCGTTGCTGCTGGGAGAGCGCCTGACCGCTACGCAGGGCTGGGGCGCATTGCTgg > 2:494541/1‑136 (MQ=255) gTCGCGTCACCCGGCAGGCAAAGTGGCGCCGTTCTCGCTGCTGGTACCGGTGATTGGCCTGAGTTCGTCGGCGTTGCTGCTGGGAGAGCGCCTGACCGCTACGCAGGGCTGGGGCGCATTGCTGGTGATggccggc < 2:270250/136‑1 (MQ=255) gTCGCGTCACCCGGCAGGCAAAGTGGCGCCGATCTCGCTGCTGGTACCGGTGATTGGCCTGAGTTCGTCGGCGTTGCTGCTGGGAGAGCGCCTGACCGCTACGCAGGGCTGGGGCGCATTGCTGGTGATggccggc < 2:327637/136‑1 (MQ=255) gTCGCGTCACCCGGCAGGCAAAGTGGCGCCGATCTCGCTGCTGGTACCGGTGATTGGCCTGAGTTCGTCGGCGTTGCTGCTGGGAGAGCGCCTGACCGCTACGCAGGGCTGGGGCGCATTGCTGGTGATggccggc < 2:330305/136‑1 (MQ=255) tCACCCGGCAGGCAAAGTGGCGCCGTTCTCGCTGCTGGTACCGGTGATTGGCCTGAGTTCGTCGGCGTTGCTGCTGGGAGAGCGCCTGACCGCTACGCAGGGCTGGGGCGCATTGCTGGTGATGGCCGGCctgctg < 1:43399/136‑1 (MQ=255) tCACCCGGCAGGCAAAGTGGCGCCGTTCTCGCTGCTGGTACCGGTGATTGGCCTGAGTTCGTCGGCGTTGCTGCTGGGAGAGCGCCTGACCGCTACGCAGGGCTGGGGCGCATTGCTGGTGATGGCCGGCctgctg < 2:415861/136‑1 (MQ=255) tGGCGCCGTTCTCGCTGCTGGTACCGGTGATTGGCCTGAGTTCGTCGGCGTTGCTGCTGGGAGAGCGCCTGACCGCTACGCAGGGCTGGGGCGCATTGCTGGTGATGGCCGGCCTGCTGGTGAATGTATTc < 2:411360/131‑1 (MQ=255) tGGCGCCGTTCTCGCTGCTGGTACCGGTGATTGGCCTGAGTTCGTCGGCGTTGCTGCTGGGAGAGCGCCTGACCGCTACGCAGGGCTGGGGCGCATTGCTGGTGATGGCCGGCCTGCTGGTGAATGTATTc > 1:411360/1‑131 (MQ=255) gcgcCGTTCTCGCTGCTGGTACCGGTGATTGGCCTGAGTTCGTCGGCGTTGCTGCTGGGAGAGCGCCTGACCGCTACGCAGGGCTGGGGCGCATTGCTGGTGATGGCCGGCCTGCTGGTGAATGTATTCGGTgcgc < 2:412471/136‑1 (MQ=255) | GGCCATGCCTTGGCCAATATCAGTTGGAGTTCGGTGCTGGCCCTGGCGTATTTGGCCTTTGTGGCCACCATGCTCGGCTACAGCCTGTGGAGCAAGTTGCTGTCGCGTCACCCGGCAGGCAAAGTGGCGCCGTTCTCGCTGCTGGTACCGGTGATTGGCCTGAGTTCGTCGGCGTTGCTGCTGGGAGAGCGCCTGACCGCTACGCAGGGCTGGGGCGCATTGCTGGTGATGGCCGGCCTGCTGGTGAATGTATTCGGTGCGC > NC_002947/3276796‑3277057 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |