| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,284,715 | G→A | 20.0% | P55L (CCC→CTC) | PP_2884 ← | XRE family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,284,715 | 0 | G | A | 20.0% | 40.5 / 3.8 | 20 | P55L (CCC→CTC) | PP_2884 | XRE family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (10/6); new base A (2/2); total (12/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGGCCTTCGACGCTGGCGCCGACCAGCAGCATGCGCAGGCCATTGCGGCCCAGGTCGGGTTGTTCGCCACCACGGAATACGTAGCGTTCCTCACGCACCGGCTCGTCGAAGCTGAAAAACTCCGCCAGGCTCATGGGAATGCCTTCGAGCAGTTTTTTCAGGGAGCTGACCGAAGGGCTGACGCGATTCTGCTCGATCTGCGAGATCGTCGAATTGGTCAGCCCGCTGCGACGGGCCAGTTCCCGTTGGGAGAGGTTGTTGCGTTCAC > NC_002947/3284580‑3284847 | cggcCTTCGACGCTGGCGCCGACCAGCAGCATGCGCAGGCCATTGCGGCCCAGGTCGGGTTGTTCGCCACCACGGAATACGTAGCGTTCCTCACGCACCGGCTCGTCGAAGCTGAAAAACTCCGCCAGGCTCATgg > 1:246178/1‑136 (MQ=255) ccTTCGACGCTGGCGCCGACCAGCAGCATGCGCAGGCCATTGCGGCCCAGGTCGGGTTGTTCGCCACCACGGAATACGTAGCGTTCCTCACGCACCGGCTCGTCGAAGCTGAAAAACTCCGCCAGGCTCATGGGaa > 1:76219/1‑136 (MQ=255) gcAGGCCATTGCGGCCCAGGTCGGGTTGTTCGCCACCACGGAATACGTAGCGTTCCTCACGCACCGGCTCGTCGAAGCTGAAAAACTCCGCCAGGCTCATGGGAATGCCTTCGAGCAGTTTTTTCAGGGAGCTGAc > 1:160154/1‑136 (MQ=255) ccATTGCGGCCCAGGTCGGGTTGTTCGCCACCACGGAATACGTAGCGTTCCTCACGCACCGGCTCGTCGAAGCTGAAAAACTCCGCCAGGCTCATGGGAATGCCTTCGAGCAGTTTTTTCAGGGAGCTGACCGAAg > 2:494203/1‑136 (MQ=255) cATTGCGGCCCAGGTCGGGTTGTTCGCCACCACGGAATACGTAGCGTTCCTCACGCACCGGCTCGTCGAAGCTGAAAAACTCCGCCAGGCTCATGGGAATGCCTTCGAGCAGTTTTTTCAGGGAGCTGACCGAAgg > 1:43816/1‑136 (MQ=255) gCGGCCCAGGTCGGGTTGTTCGCGACCACGGAATAGGTAGCGTTCCTCACGCACCGGCTCGTCGAAGCTGAATATCTCCGCCAGGCTCTTGGGATTGCCTTCGAGCAGTTTTTTCAGGGAGCTGACCGAAGGGCTg < 1:380441/136‑1 (MQ=255) gCGGCCCAGGTCGGGTTGTTCGCCACCACGGAATACGTAGCGTTCCTCACGCACCGGCTCGTCGAAGCTGAAAAACTCCGCCAGGCTCATGGGAATGCCTTCGAGCAGTTTTTTCAGGGAGCTGACCGAAGGGCTg < 1:326737/136‑1 (MQ=255) gcGGGTTGTTCGCCACCACGGAATACGTAGCGTTCCTCACGCACCGGCTCGTCGAAGCTGAAAAACTCCGCCAGGCTCATGGGAATGCCTTCGAGCAGTTTTTTCAGGGAGCTGACCGAAGGGCTGACGCGATTCt < 1:294145/135‑1 (MQ=255) cGGGTTGTTCGCCACCACGGAATACGTAGCGTTCCTCACGCACCGGCTCGTCGAAGCTGAAAAACTCCGCCAGGCTCATGAGAATGCCTTCGAGCAGTTTTTTCAGGGAGCTGACCGAAGGGCTGACGCGATTCTg > 2:411299/1‑136 (MQ=255) cGGGTTGATCGCCACCACGGAATACGTAGCGTTCCTCACGCACCGGCTCGTCGAAGCTGAAAAACTCAGCCAGGCTCATGAGAATGCCTTCGAGCAGTTTTTTCAGGGAGATGACCGAAGGGCTGACGCGATTCTg > 2:434602/1‑136 (MQ=255) gggTTGTTCGCCACCACGGAATACGTAGCGTTCCTCACGCACCGGCTCGTCGAAGCTGAAAAACTCCGCCAGGCTCATGGGAATGCCTTCGAGCAGTTTTTTCAGGGAGCTGACCGAAGGGCTGACGCGATTCTGc > 2:177063/1‑136 (MQ=255) gggTTGTTCGCCACCACGGAATACGTAGCGTTCCTCACGCACCGGCTCGTCGAAGCTGAAAAACTCCGCCAGGCTCATGGGAATGCCTTCGAGCAGTTTTTTCAGGGAGCTGACCGAAGGGCTGACGCGATTCTGc > 2:288130/1‑136 (MQ=255) ggAATACGTAGCGTTCCTCACGCACCGGCTCGTCGAAGCTGAAAAACTCCGCCAGGCTCATGGGAATGCCTTCGAGCAGTTTTTTCAGGGAGCTGACCGAAGGGCTGACGCGATTCTGCTCGATCTGCGAGAtcgt > 1:96809/1‑136 (MQ=255) tCCTCACGCACCGGCTCGTCGAAGCTGAAAAACTCCGCCAGGCTCATGGGAATGCCTTCGAGCAGTTTTTTCAGGGAGCTGACCGAAGGGCTGACGCGATTCTGCTCGATCTGCGAGATCGTCGAATTGGTCAGcc > 1:421145/1‑136 (MQ=255) cGCACCGGCTCGTCGAAGCTGAAAAACTCCGCCAGGCTCATGGGAATGCCTTCGAGCAGTTTTTTCAGGGAGCTGACCGAAGGGCTGACGCGATTCTGCTCGATCTGCGAGATCGTCGAATTGGTCAGCCCGCTGc > 1:338386/1‑136 (MQ=255) tcgtcgAAGCTGAAAAACTCCGCCAGGCTCATGGGAATGCCTTCGAGCAGTTTTTTCAGGGAGCTGACCGAAGGGCTGACGCGATTCTGCTCGATCTGCGAGATCGTCGAATTGGTCAGCCCGCTGCGACGGGCCa < 2:96809/136‑1 (MQ=255) tcgtcgAAGCTGAAAAACTCCGCCAGGCTCATGGGAATGCCTTCGAGCAGTTTTTTCAGGGAGCTGACCGAAGGGCTGACGCGATTCTGCTCGATCTGCGAGATCGTCGAATTGGTCAGCCCGCTGCGACGGGCCa < 1:98267/136‑1 (MQ=255) ccgAAGCTGAAAAACTCCGCCAGGCTCATGGGAATGCCTTCGAGCAGTTTTTTCAGGGAGCTGACCGAAGGGCTGACGCGATTCTGCTCGATCTGCGAGATCGTCGAATTGGTCAGCCCGCTGCGACGGGCCAGtt < 1:504930/135‑1 (MQ=255) cgAAGCTGAAAAACTCCGCGAGGCTCATGAGTATGACTTAGAGCAGTTTTTTCAGGTAGCTGACCGAAGGGCTGACGCGATTCTGCTCGATCTGCGAGATCGTCGAATTGGTCAGCCCGCTGCGACGGGCCAGTTc < 1:434602/136‑1 (MQ=255) cgAAGCTGAAAAACTCCGCCAGGCTCATGAGAATGCCTTCGAGCAGTTTTTTCAGGGAGCTGACCGAAGGGCTGACGCGATTCTGCTCGATCTGCGAGATCGTCGAATTGGTCAGCCCGCTGCGACGGGCCAGTTc < 1:411299/136‑1 (MQ=255) gAAGCTGAAAAACTCCGCCAGGCTCATGGGAATGCCTTCGAGCACTTTTTTCAGGGAGCTGACCGAAGGGCTGACGCGATTCTGCTCGATCTGCGAGATCGTCGAATTGGTCAGCCCGCTGCGACGGGCCAGTTcc > 1:193267/1‑136 (MQ=255) attggAATGCCTTCGAGCAGTTTTTTCAGGGAGCTGACCGAAGGGCTGACGCGATTCTGCTCGATCTGCGAGATCGTCGAATTGGTCAGCCCGCTGCGACGGGCCAGTTCCCGTTGGGAGAGGTTGTTGCGTTCAc < 1:463419/133‑1 (MQ=255) | CGGCCTTCGACGCTGGCGCCGACCAGCAGCATGCGCAGGCCATTGCGGCCCAGGTCGGGTTGTTCGCCACCACGGAATACGTAGCGTTCCTCACGCACCGGCTCGTCGAAGCTGAAAAACTCCGCCAGGCTCATGGGAATGCCTTCGAGCAGTTTTTTCAGGGAGCTGACCGAAGGGCTGACGCGATTCTGCTCGATCTGCGAGATCGTCGAATTGGTCAGCCCGCTGCGACGGGCCAGTTCCCGTTGGGAGAGGTTGTTGCGTTCAC > NC_002947/3284580‑3284847 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |