| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,758,380 | A→G | 21.0% | Q619R (CAA→CGA) | PP_3319 → | GGDEF domain‑containing sensory box protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,758,380 | 0 | A | G | 21.0% | 33.5 / 5.4 | 19 | Q619R (CAA→CGA) | PP_3319 | GGDEF domain‑containing sensory box protein |
| Reads supporting (aligned to +/- strand): ref base A (8/7); new base G (2/2); total (10/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCGATGCATTTCCAGTGCGGTCAGTTCGTTGAATGTATCCAGGCAGTGTTGAGCAAGCATGGGCTCAGCGCTGGACAATTGGAACTGGAGATAACCGAGTCACTCTTGCTGCATAACGTTGAACAAGCAATCGCAACCTTGCACCGCCTCAAAGACTTGGGTGTACGCATTGCGCTGGATGATTTCGGTACGGGGTTCTCCAGCCTGAGTTATCTCAAGTGCTTGCCAATAGACAAAATCAAGATTGACCGCT > NC_002947/3758256‑3758508 | ccGATGCATTTCCAGTGCGGTCAGTTCGTTGAATGTATCCAGGCAGTGTTGAGCAAGCATGGGCTCAGCGCTGGACAATTGGAACTGGAGATAACCGAGTCACTCTTGCTGCATAACGTTGAACAAGCAATCGCaa > 2:179292/1‑136 (MQ=255) tATCCAGGCAGTGTTGAGCAAGCATGGGCTCAGCGCTGGACAATTGGAACTGGAGATAACCGAGTCACTCTTGCTGCATAACGTTGAACAAGCAATCGCAACCtt < 2:301636/105‑1 (MQ=255) tATCCAGGCAGTGTTGAGCAAGCATGGGCTCAGCGCTGGACAATTGGAACTGGAGATAACCGAGTCACTCTTGCTGCATAACGTTGAACAAGCAATCGCAACCtt > 1:301636/1‑105 (MQ=255) agcaTGGGCTCAGCGCTGGACAATTGGAACTGGAGATAACCGAGTCACTCTTGCTGCATAACGTTGAACAAGCAATCGCAACCTTGCACCGCCTCAAAGACTTGGGTGTACGCATTGCGCTGGATGATTTCGGTAc < 1:202873/136‑1 (MQ=255) tGGGCTCAGCGCTGGACAATTGGAACTGGAGATAACCGAGTCACTCTTGCTGCATAACGTTGAACAAGCAATCGCAACCTTGCACCGCCTCAAAGACTTGGGTGTACGCATTGCGCTGGATGATTTCGGTACgggg > 1:430529/1‑136 (MQ=255) tGGGCTCAGCGCTGGACAATTGGAACTGGAGATAACCGAGTCACTCTTGCTGCATAACGTTGAACAAGCAATCGCAACCTTGCACCGCCTCAAAGACTTGGGTGTACGCATTGCGCTGGATGATTTCGGTACgggg > 2:34740/1‑136 (MQ=255) cAGCGCTGGACAATTGGAACTGGAGATAACCGAGTCACTCTTGCTGCATAACGTTGAACAAGCAATCGCAACCTTGCACCGCCTCAAAGACTTGGGTGTACGCATTGCGCTGGATGATTTCGGTACGGGGTTCTcc < 1:179292/136‑1 (MQ=255) ggAGATAACCGAGTCACTCTTGCTGCATAACGTTGAACAAGCAATCGCAACCTTGCACCGCCTCAAAGACTTGGGTGTACGCATTGCGCTGGATGATTTCGGTACGGGGTTCTCCAGCCTGAGTTATCTCAAGTGc > 2:130939/1‑136 (MQ=255) ggAGATAACCGAGTCACTCTTGCTGCATAACGTTGAACAAGCAATCGCAACCTTGCACCGCCTCAAAGACTTGGGTGTACGCATTGCGCTGGATGATTTCGGTACGGGGTTCTCCAGCCTGAGTTATCTCAAGAGc > 2:227831/1‑136 (MQ=255) tAACCGAGTCACTCTTGCTGCATAACGTTGAACAAGCAATCGCAACCTTGCACCGCCTCAAAGACTTGGGTGTACGCATTGCGCTGGATGATTTCGGTACGGGGTTCTCCAGCCTGAGTTATCTCAAGTGCTTGcc > 2:349881/1‑136 (MQ=255) cGAGTCACTCTTGCTGCATAACGTTGAACAAGCAATCGCAACCTTGCACCGCCTCAAAGACTTGGGTGTACGCATTGCGCTGGATGATTTCGGTACGGGGTTCTCCAGCCTGAGTTATCTCAAGTGCTTGCCAATa < 1:208973/136‑1 (MQ=255) cACTCTTGCTGCATAACGTTGAACAAGCAATCGCAACCTTGCACCGCCTCAAAGACTTGGGTGTACGCATTGCGCTGGATGATTTCGGTACGGGGTTCTCCAGCCTGAGTTATCTCAAGTGCTTGCCAATAGACaa > 1:157762/1‑136 (MQ=255) ctctTGCTGCATAACGTTGAACGAGCAATCGCAACCTTGCACCGCCTCAAAGACTTGGGTGTACGCATTGCGCTGGATGATTTCGGTACGGGGTTCTCCAGTCTGAGTTATCTCAAGTGCTTGCCAATAGACaaaa > 1:101374/1‑136 (MQ=255) ctctTGCTGCATAACGTTGAACGAGCAATCGCAACCTTGCACCGCCTCAAAGACTTGGGTGTACGCATTGCGCTGGATGATTTCGGTACGGGGTTCTCCAGTCTGAGTTATCTCAAGTGCTTGCCAATAGACaaaa > 1:98924/1‑136 (MQ=255) aTAACGTTGAACGAGCAATCGCAACCTTGCACCGCCTCAAAGACTTGGGTGTACGCATTGCGCTGGATGATTTCGGTACGGGGTTCTCCAGTCTGAGTTATCTCAAGTGCTTGCCAATAGACAAAATCAAGATTGa < 2:101374/136‑1 (MQ=255) aTAACGTTGAACGAGCAATCGCAACCTTGCACCGCCTCAAAGACTTGGGTGTACGCATTGCGCTGGATGATTTCGGTACGGGGTTCTCCAGTCTGAGTTATCTCAAGTGCTTGCCAATAGACAAAATCAAGATTGa < 2:98924/136‑1 (MQ=255) gTTGAACAAGCAATCGCAACCTTGCACCGCCTCAAAGACTTGGGTGTACGCATTGCGCTGGATGATTTCGGTACGGGGTTCTCCAGCCTGAGTTATCTCAAGTGCTTGCCAATAGACAAAATCAAGATTGACCGCt < 1:505988/136‑1 (MQ=255) gTTGAACAAGCAATCGCAACCTTGCACCGCCTCAAAGACTTGGGTGTACGCATTGCGCTGGATGATTTCGGTACGGGGTTCTCCAGCCTGAGTTATCTCAAGTGCTTGCCAATAGACAAAATCAAGATTGACCGCt < 1:394438/136‑1 (MQ=255) gTTGAACAAGCAATCGCAACCTTGCACCGCCTCAAAGACTTGGGTGTACGCATTGCGCTGGATGATTTCGGTACGGGGTTCTCCAGCCTGAGTTATCTCAAGTGCTTGCCAATAGACAAAATCAAGATTGACCGCt < 1:138886/136‑1 (MQ=255) | CCGATGCATTTCCAGTGCGGTCAGTTCGTTGAATGTATCCAGGCAGTGTTGAGCAAGCATGGGCTCAGCGCTGGACAATTGGAACTGGAGATAACCGAGTCACTCTTGCTGCATAACGTTGAACAAGCAATCGCAACCTTGCACCGCCTCAAAGACTTGGGTGTACGCATTGCGCTGGATGATTTCGGTACGGGGTTCTCCAGCCTGAGTTATCTCAAGTGCTTGCCAATAGACAAAATCAAGATTGACCGCT > NC_002947/3758256‑3758508 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |