| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,795,913 | A→T | 18.7% | V192D (GTC→GAC) | PP_3355 ← | beta‑ketothiolase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,795,913 | 0 | A | T | 18.7% | 45.4 / 6.7 | 27 | V192D (GTC→GAC) | PP_3355 | beta‑ketothiolase |
| Reads supporting (aligned to +/- strand): ref base A (14/8); new base T (3/2); total (17/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.04e-01 | |||||||||||
GCAGTCGGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCACCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCAGGTTTTCCGCAGTACC > NC_002947/3795782‑3796037 | gcAGTCGGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGAt > 2:398515/1‑136 (MQ=255) cAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCtcgtcg < 2:446289/136‑1 (MQ=255) ggtggggggATGTCCTGGCTGACCTTACTTTCGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGTCGCTGACGTTTTCCTCGTCGAACCAGCCCTGCACCTGGGCtt < 2:282118/135‑1 (MQ=255) ggtggCGGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCACCTGGGCTTGCAg < 1:251793/136‑1 (MQ=255) gtggCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCACCTGGGCTTGCAgg > 2:308087/1‑136 (MQ=255) gTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCAc > 1:18220/1‑117 (MQ=255) gTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCAc < 2:18220/117‑1 (MQ=255) tCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCACCTGGGCTTGCAGGGCCCGCt > 2:337449/1‑136 (MQ=255) aCCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCACCTGGGCTTGCAGGGCCCGCTGATGGCTgc < 1:308087/136‑1 (MQ=255) cactcacGCCACGCGGCAATGCAAAGCCGCGTGGCTGGCAGCCTTCTACCTCCACTGCCTGCGCGGTGACGCTGACGACTTCCTCGTCGAACCAGCCCTGCACCTGGGCTTGCAGGGGCCGCTGATGGCAGCGCac > 2:305735/1‑135 (MQ=255) cgcgGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCACCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGt > 2:13762/1‑136 (MQ=255) ggCCATGCAAAGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCACCCCAGCACCTGGGCTTGCCCGGCCCGCTGATGGCTGCGCAGGGCCCCCCCGTccc > 2:352540/1‑135 (MQ=255) ggCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCACCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTccc > 2:361731/1‑135 (MQ=255) ggCAATGCAATGCCGCGTGGCAGGCAGCCTTCTACCTGCAGTGCCTGCGCCGGGACGCTGTCGATTTCCTCGTCGAACCAGCCCAGCACCGGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCAcgcctgcc > 2:409208/1‑131 (MQ=255) ggcCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCACCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCAcg < 1:154248/135‑1 (MQ=255) cgcgTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCACCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACgcgc > 2:260184/1‑136 (MQ=255) ggctggcAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCACCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGc > 1:349146/1‑136 (MQ=255) ggctggcAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCACCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGc > 2:43738/1‑136 (MQ=255) ctggcAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGTCGATTTCCTCGTCGAACCAGCCCTGCACCTGGGCTTGCAGGGCCCGCTGATGGCt > 1:386872/1‑96 (MQ=255) ctggcAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGTCGATTTCCTCGTCGAACCAGCCCTGCACCTGGGCTTGCAGGGCCCGCTGATGGCt < 2:386872/96‑1 (MQ=255) ctggcAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGTCGATTTCCTCGTCGAACCAGCCCTGCACCTGGGCTTGCAGGGCCCGCTGATGGCt < 2:389253/96‑1 (MQ=255) ctggcAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGTCGATTTCCTCGTCGAACCAGCCCTGCACCTGGGCTTGCAGGGCCCGCTGATGGCt > 1:389253/1‑96 (MQ=255) tACCTCCAGTGCCTGCGCGGTGACGCTGACGAATTCCTCGTCGAACCAGCCCTGCACCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGcc > 2:324490/1‑136 (MQ=255) aGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCACCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCAGGtttt < 1:43738/136‑1 (MQ=255) gCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCACCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCAcgc > 1:441343/1‑105 (MQ=255) gCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCACCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCAcgc < 2:441343/105‑1 (MQ=255) cgGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCACCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCCGGCCATAGGCACGGGCCAGGTTTTCCGCAGTAcc > 1:232460/1‑136 (MQ=255) | GCAGTCGGGCCAGTGCGGCCGCGTCGGTAGGCCGTGGGTGGCTGTCCTGGCTGACCTCACTCACGCCACGCGGCAATGCAATGCCGCGTGGCTGGCAGCCTTCTACCTCCAGTGCCTGCGCGGTGACGCTGACGATTTCCTCGTCGAACCAGCCCTGCACCTGGGCTTGCAGGGCCCGCTGATGGCTGCGCAGGGCCCACGCGTCCACCGTTTCACGCGCCAGGCCATAGGCACGGGCCAGGTTTTCCGCAGTACC > NC_002947/3795782‑3796037 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |