| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,579,147 | A→T | 36.1% | D156V (GAC→GTC) | PP_4057 → | membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,579,147 | 0 | A | T | 36.1% | 2.4 / 4.4 | 11 | D156V (GAC→GTC) | PP_4057 | membrane protein |
| Reads supporting (aligned to +/- strand): ref base A (3/4); new base T (2/2); total (5/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 | |||||||||||
TGAAACTGCAGCGGGCGATGTGCACCGCGCAGGGATTTTCGTGGGGCACAACAACCTGCAAAGCAGCTTCAGAGGCGCGCGCCCTCTGCTGGGCGACAAGCAGCGCAAAGCGGTGAACTTGAGCGGGGAAAGCCTGGGGGTGTACTGGAGCATGACCCATGAACAGGGTTGGCACCTGGATGCCGTAGCCATGGGCTCGCGGATCGACGTGATGGGCCGTGGCGAAAACG > NC_002947/4579052‑4579281 | tgAAACTGCAGCGGGCGATGTGCACCGCGCAGGGATTTTCGTGGGGCACAACAACCTGCAAAGCAGCTTCAGAGGCGCGCGCCCTCTGCTGGGCGACAAGCAGCGCAAAGCGGTGAACTTGAGCGGGGAAAGCCTg < 2:478811/136‑1 (MQ=255) cTGCAGCGGGCGATGTGCACCGCGCAGGGATTTTCGTGGGGCACAACAACCTGCAAAGCAGCTTCAGAGGCGCGCGCCCTCTGCTGGGCGACAAGCAGCGCAAAGCGGTGAACTTGAGCGGGGAAAGCCTgggggg > 2:115273/1‑135 (MQ=255) cgcgCAGGGATTTTCGTGGGGCACAACAACCTGCAAAGCAGCTTCAGAGGCGCGCGCCCTCTGCTGGGCGACAAGCAGCGCAAAGCGGTGAACTTGAGCGGGGAAAGCCTGGGGGTGTACTGGAGCATGACCCATg < 1:730/136‑1 (MQ=255) cacaACAACCTGCAAAGCAGCTTCAGAGGCGCGCGCCCTCTGCTGGGCGACAAGCAGCGCAAAGCGGTGAACTTGAGCGGGGAAAGCCTGGGGGTGTACTGGAGCATGACCCATGAACAGGGTTGGCACCTGGATg < 1:164826/136‑1 (MQ=255) cAGAGGCGCGCGCCCTCTGCTGGGCGTCAAGCAGCGCAAAGCGGTGAACTTGAGCGGGGAAAGCCTGGGGGTGTACTGGAGCATGACCCATGa > 1:360732/1‑93 (MQ=255) cAGAGGCGCGCGCCCTCTGCTGGGCGTCAAGCAGCGCAAAGCGGTGAACTTGAGCGGGGAAAGCCTGGGGGTGTACTGGAGCATGACCCATGa > 1:363378/1‑93 (MQ=255) cAGAGGCGCGCGCCCTCTGCTGGGCGTCAAGCAGCGCAAAGCGGTGAACTTGAGCGGGGAAAGCCTGGGGGTGTACTGGAGCATGACCCATGa < 2:360732/93‑1 (MQ=255) cAGAGGCGCGCGCCCTCTGCTGGGCGTCAAGCAGCGCAAAGCGGTGAACTTGAGCGGGGAAAGCCTGGGGGTGTACTGGAGCATGACCCATGa < 2:363378/93‑1 (MQ=255) cgcCCTCTGCTGGGCGACAAGCAGCGCAAAGCGGTGAACTTGAGCGGGGAAAGCCTg < 1:415959/57‑1 (MQ=255) cgcCCTCTGCTGGGCGACAAGCAGCGCAAAGCGGTGAACTTGAGCGGGGAAAGCCTg > 2:415959/1‑57 (MQ=255) gACAAGCAGCGCAAAGCGGTGAACTTGAGCGGGGAAAGCCTGGGGGTGTACTGGAGCATGACCCATGAACAGGGTTGGCACCTGGATGCCGTAGCCATGGGCTCGCGGATCGACGTGATGGGCCGTGGCGAAAACg > 2:110898/1‑136 (MQ=255) | TGAAACTGCAGCGGGCGATGTGCACCGCGCAGGGATTTTCGTGGGGCACAACAACCTGCAAAGCAGCTTCAGAGGCGCGCGCCCTCTGCTGGGCGACAAGCAGCGCAAAGCGGTGAACTTGAGCGGGGAAAGCCTGGGGGTGTACTGGAGCATGACCCATGAACAGGGTTGGCACCTGGATGCCGTAGCCATGGGCTCGCGGATCGACGTGATGGGCCGTGGCGAAAACG > NC_002947/4579052‑4579281 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |