| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,637,297 | A→G | 100% | S143P (TCT→CCT) | uvrY ← | BarA/UvrY two‑componenent system response regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,637,297 | 0 | A | G | 100.0% | 29.9 / NA | 10 | S143P (TCT→CCT) | uvrY | BarA/UvrY two‑componenent system response regulator |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (3/7); total (3/7) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
GACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCAC > NC_002947/4637187‑4637410 | gACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGGCCCCTGCGGCTGGAACGGTTTCAgc < 1:369795/136‑1 (MQ=255) ggTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGGCCCCTGCGGCTGGAACGGTTTCAgc > 1:263151/1‑133 (MQ=255) ggTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGGCCCCTGCGGCTGGAACGGTTTCAgc < 2:263151/133‑1 (MQ=255) gTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCATCCGACGATCATCATGGCAATCTGGATTTACAGTTCGGACAACTAGTCGAACGGAGGCCCCTGAGGCTGGAACGGTTTCAGCGCCa > 1:501/1‑136 (MQ=255) gCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGGCCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGAta > 2:8904/1‑135 (MQ=255) cacaACTTGTCGTAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGGCCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCt < 1:344429/136‑1 (MQ=255) aaCTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGGCCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCg < 1:145229/136‑1 (MQ=255) tCTGGCAGCTGTCGTTCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGGCCCCTGCGGCTGGTACGGTTTCTGCGCCATCTGCTGGGCGATCTGCGGGCTTATATAGCGCTGGCCGGCaaa < 1:296723/136‑1 (MQ=255) gCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGGCCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGa < 1:506802/136‑1 (MQ=255) tgggACAACGCGTCGAACGGTGGCCCCTGCGGCTGGAACGGTTTCAGCTCCACCTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCAc < 1:140094/134‑1 (MQ=255) | GACGGTCTTGGGCGAGAGGCACAACTTGTCGGAGATGATCTGCACTTTCTGGCAGCCGACGATCATCAGGGCAATCTGGATTTCCCGTTCGGACAACGCGTCGAACGGAGACCCCTGCGGCTGGAACGGTTTCAGCGCCAACTGCTGGGCGATCTGCGGGCTGATATAGCGCTGGCCGGCAAAGGCCAGACGAATGGCCTGGACCATTTCGTCAAGGCCTGCAC > NC_002947/4637187‑4637410 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |