| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 6,032,315 | (A)9→8 | intergenic (+22/+45) | PP_5729 → / ← rpmG | hypothetical protein/50S ribosomal protein L33 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 6,032,307 | 0 | A | . | 96.0% | 105.5 / ‑0.9 | 25 | intergenic (+14/+53) | PP_5729/rpmG | hypothetical protein/50S ribosomal protein L33 |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base . (9/15); total (10/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.00e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.08e-01 | |||||||||||
CCTTACCGGCCGCACCCGGGTGGTCGGCCCCAACGAAATGTGCACCCGCGAGTACGACGTCGAGCGCATCCAGATCAAGGCCGGTGCCGACCTGCTGATCCAGGGCTTCGACTTCAACTGACCCTGCAACAGCCAAAAAAAAACCCGCCTCCTTTCGGATGCGGGTTTTTTTCAGGTCGCCGATCAATTACTTGATCTTGGCTTCCTTGTACACCACGTGCTTGCGAACAACCGGATCATATTTCTTGATCTCGATTTTGTCCG > NC_002947/6032173‑6032436 | ccTTACCGGCCGCACCCGGGTGGTCGGCCCCAACGAAATGTGCACCCGCGAGTACGACGTCGAGCGCATCCAGATCAAGGCCGGTGCCGACCTGCTGATCCAGGGCTTCGACTTCAACTGACCCTGCAACAGCCaa > 1:140080/1‑136 (MQ=255) cGGCCGCTCCCGGGTGGTCGGCCCCAACGAAATGTGCACCCGCGAGTACGACGTCGAGCGCATCCAGATCAAGGCCGGTGCCGCCCTGCTGATCCAGGGCTTCGACTTCAACTGACCCTGCAACAGCCaaaaaaaa > 2:614242/1‑136 (MQ=255) cGGCCGCACCCGGGTGGTCGGCCCCAACGAAATGTGCACCCGCGAGTACGACGTCGAGCGCATCCAGATCAAGGCCGGTGCCGACCTGCTGATCCAGGGCTTCGACTTCAACTGACCCTGCAACAGCCaaaaaaaa > 2:481430/1‑136 (MQ=255) ggCCGCACCCGGGTGGTCGGCCCCAACGAAATGTGCACCCGCGAGTACGACGTCGAGCGCATCCAGATCAAGGCCGGTGCCGACCTGCTGATCCAGGGCTTCGACTTCAACTGACCCTGCAACAGCCaaaaaaaac > 2:90831/1‑135 (MQ=255) ggCCGCACCCGGGTGGTCGGCCCCAACGAAATGTGCACCCGCGAGTACGACGTCGAGCGCATCCAGATCAAGGCCGGTGCCGACCTGCTGATCCAGGGCTTCGACTTCAACTGACCCTGCAACAGCCaaaaaaaac > 1:1305315/1‑135 (MQ=255) ggCCGCACCCGGGTGGTCGGCCCCAACGAAATGTGCACCCGCGAGTACGACGTCGAGCGCATCCAGATCAAGGCCGGTGCCGACCTGCTGATCCAGGGCTTCGACTTCAACTGACCCTGCAACAGCCaaaaaaaac > 1:664820/1‑135 (MQ=255) aCCCGGGTGGTCGGCCCCAACGAAATGTGCACCCGCGAGTACGACGTCGAGCGCATCCAGATCAAGGCCGGTGCCGACCTGCTGATCCAGGGCTTCGACTTCAACTGACCCTGCAACAGCC‑AAAAAAAACCCGcct > 1:775900/1‑136 (MQ=255) aCCCGGGTGGTCGGCCCCAACGAAATGTGCACCCGCGAGTACGACGTCGAGCGCATCCAGATCAAGGCCGGTGCCGACCTGCTGATCCAGGGCTTCGACTTCAACTGACCCTGCAACAGCC‑AAAAAAAACCCGcca > 2:24080/1‑135 (MQ=255) cGGCCCCAACGAAATGTGCACCCGCGAGTACGACGTCGAGCGCATCCAGATCAAGGCCGGTGCCGACCTGCTGATCCAGGGCTTCGACTTCAACTGACCCTGCAACAGCC‑‑AAAAAAACCCGCCTCCTTTCGGATGc < 2:140080/136‑1 (MQ=255) aaTGTGCACCCGCGAGTACGACGTCGAGCGCATCCAGATCAAGGCCGGTGCCGACCTGCTGATCCAGGGCTTCGACTTCAACTGACCCTGCAACAGCC‑AAAAAAAACCCGCCTCCTTTCGGATGCGGGTTTTTTTc < 2:39228/136‑1 (MQ=255) tgCACCCGCGAGTACGACGTCGAGCGCATCCAGATCAAGGCCGGTGCCGACCTGCTGATCCAGGGCTTCGACTTCAACTGACCCTGCAACAGCCAAAAAAAAACCCGCCTCCTTTCGGATGCGGGTTTTTTTCAgg > 2:1138510/1‑136 (MQ=255) cACCCGCGAGTACGACGTCGAGCGCATCCATATCAAGGCCGGTGCCGACCTGCTGATCCAGGGCTTCGACTTCAACTGACCATGCAACAGCC‑AAAAAAAACCCGCCTCCTTTCGGATGCGGGTTTTTTTCAGGTCg < 1:1283733/136‑1 (MQ=255) cccGCGAGTACGACGTCGAGCGCATCCAGATCAAGGCCGGTGCCGACCTGCTGATCCAGGGCTTCGACTTCAACTGACCCTGCAACAGCC‑AAAAAAAACCCGCCTCCTTTCGGATGCGGGTTTTTTTCAGGTCGcc < 2:729448/136‑1 (MQ=255) cccGCGAGTACGACGTCGAGCGCATCCAGATCAAGGCCGGTGCCGACCTGCTGATCCAGGGCTTCGACTTCAACTGACCCTGCAACAGCC‑AAAAAAAACCCGCCTCCTTTCGGATGCGGGTTTTTTTCAGGTCGcc < 2:332152/136‑1 (MQ=255) cgcgAGTACGACGTCGAGCGCATCCAGATCAAGGCCGGTGCCGACCTGCTGATCCAGGGCTTCGACTTCAACTGACCCTGCAACAGCC‑AAAAAAAACCCGCCTCCTTTCGGATGCGGGTTTTTTTCAGGTCGCCGa < 2:775900/136‑1 (MQ=255) gTCGAGCGCATCCAGATCAAGGCCGGTGCCGACCTGCTGATCCAGGGCTTCGACTTCAACTGACCCTGCAACAGCC‑AAAAAAAACCCGCCTCCTTTCGGATGCGGGTTTTTTTCAGGTCGCCGATCAATTACTTGa > 1:290100/1‑136 (MQ=255) cGAGCGCATCCAGATCAAGGCCGGTGCCGACCTGCTGATCCAGGGCTTCGACTTCAACTGACCCTGCAACAGCC‑AAAAAAAACCCGCCTCCTTTCGGATGCGGGTTTTTTTCAGGTCGCCGATCAATTACTTGATc > 2:1116340/1‑136 (MQ=255) cGAGCGCATCCAGATCAAGGCCGGTGCCGACCTGCTGATCCAGGGCTTCGACTTCAACTGACCCTGCAACAGCC‑AAAAAAAACCCGCCTCCTTTCGGATGCGGGTTTTTTTCAGGTCGCCGATCAATTACTTGATc > 2:135004/1‑136 (MQ=255) cGAGCGCATCCAGATCAAGGCCGGTGCCGACCTGCTGATCCAGGGCTTCGACTTCAACTGACCCTGCAACAGCC‑AAAAAAAACCCGCCTCCTTTCGGATGCGGGTTTTTTTCAGGTCGCCGATCAATTACTTGATc > 2:722767/1‑136 (MQ=255) gAGCGCATCCAGATCAAGGCCGGTGCCGACCTGCTGATCCAGGGCTTCGACTTCAACTGACCCTGCAACAGCC‑AAAAAAAACCCGCCTCCTTTCGGATGCGGGTTTTTTTCAGGTCGCCGATCAATTACTTGATCt < 1:722767/136‑1 (MQ=255) gAGCGCATCCAGATCAAGGCCGGTGCCGACCTGCTGATCCAGGGCTTCGACTTCAACTGACCCTGCAACAGCC‑AAAAAAAACCCGCCTCCTTTCGGATGCGGGTTTTTTTCAGGTCGCCGATCAATTACTTGATCt < 2:290100/136‑1 (MQ=255) gcgcATCCAGATCAAGGCCGGTGCCGACCTGCTGATCCAGGGCTTCGACTTCAACTGACCCTGCAACAGCC‑AAAAAAAACCCGCCTCCTTTCGGATGCGGGTTTTTTTCAGGTCGCCGATCAATTACTTGATCTTg < 2:1305315/136‑1 (MQ=255) gcgcATCCAGATCAAGGCCGGTGCCGACCTGCTGATCCAGGGCTTCGACTTCAACTGACCCTGCAACAGCC‑AAAAAAAACCCGCCTCCTTTCGGATGCGGGTTTTTTTCAGGTCGCCGATCAATTACTTGATCTTg < 2:751505/136‑1 (MQ=255) cgcATCCAGATCAAGGCCGGTGCCGACCTGCTGATCCAGGGCTTCGACTTCAACTGACCCTGCAACAGCC‑AAAAAAAACCCGCCTCCTTTCGGATGCGGGTTTTTTTCAGGTCGCCGATCAATTACTTGATCTTgg < 1:406414/136‑1 (MQ=255) ccAGATCAAGGCCGGTGCCGACCTGCTGATCCAGGGCTTCGACTTCAACTGACCCTGCAACAGCC‑AAAAAAAACCCGCCTCCTTTCGGATGCGGGTTTTTTTCAGGTCGCCGATCAATTACTTGATCTTGGCTTcc < 1:771920/136‑1 (MQ=255) cAAGGCCGGTGCCGACCTGCTGATCCAGGGCTTCGACTTCAACTGACCCTGCAACAGCCaaaaaaaacc < 2:325098/69‑3 (MQ=255) cAAGGCCGGTGCCGACCTGCTGATCCAGGGCTTCGACTTCAACTGACCCTGCAACAGCCaaaaaaaacc > 1:325098/1‑67 (MQ=255) ggTGCCGACCTGCTGATCCAGGGCTTCGACTTCAACTGACCCTGCAACAGCC‑AAAAAAAACCCGCCTCCTTTCGGATGCGGGTTTTTTTCAGGTCGCCGATCAATTAATTGATCTTGGCTTCCTTGTACACCACGt > 1:973589/1‑136 (MQ=255) ctgATCCAGGGCTTCGACTTCAACTGACCCTGCAACAGCC‑AAAAAAAACCCGCCTCCTTTCGGATGCGGGTTTTTTTCAGGTCGCCGATCAATTACTTGATCTTGGCTTCCTTGTACACCACGTGCTTGCGaacaa < 2:676594/136‑1 (MQ=255) gCTTCGACTTCAACTGACCCTGCAACAGCC‑AAAAAAAACCCGCCTCCTTTCGGATGCGGGTTTTTTTCAGGTCGCCGATCAATTACTTGATCTTGGCTTCATTGTACCCCACGTGCTTGCGAACAACCGGATCatt > 2:308245/1‑135 (MQ=255) aCTTCAACTGACCCTGCAACAGCC‑AAAAAAAACCCGCCTCCTTTCGGATGCGGGTTTTTTTCAGGTCGCCGATCAATTACTTGATCTTGGCTTCCTTGTACACCACGTGCTTGCGAACAACCGGATCATATTTCtt > 1:1063724/1‑136 (MQ=255) cTGACCCTGCAACAGCC‑AAAAAAAACCCGCCTCCTTTCGGATGCGGGTTTTTTTCAGGTCGCCGATCAATTACTTGATCTTGGCTTCCTTGTACACCACGTGCTTGCGAACAACCGGATCATATTTCTTGATCTCg < 1:337567/136‑1 (MQ=255) aaCAGCC‑AAAAAAAACCCGCCTCCTTTCGGATGCGGGTTTTTTTCAGGTCGCCGATCAATTACATGATCTTGGCTTCCTTGTACACCACGTGCTTGCGAACAACCGGATCATATTTCTTGATCTCGATTTTGTCCg < 2:1204253/136‑1 (MQ=255) | CCTTACCGGCCGCACCCGGGTGGTCGGCCCCAACGAAATGTGCACCCGCGAGTACGACGTCGAGCGCATCCAGATCAAGGCCGGTGCCGACCTGCTGATCCAGGGCTTCGACTTCAACTGACCCTGCAACAGCCAAAAAAAAACCCGCCTCCTTTCGGATGCGGGTTTTTTTCAGGTCGCCGATCAATTACTTGATCTTGGCTTCCTTGTACACCACGTGCTTGCGAACAACCGGATCATATTTCTTGATCTCGATTTTGTCCG > NC_002947/6032173‑6032436 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |