| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 3,260,681 | (C)6→7 | intergenic (‑38/+24) | PP_2855 ← / ← PP_2856 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,260,675 | 1 | . | C | 90.6% | 105.7 / 4.3 | 32 | intergenic (‑32/+30) | PP_2855/PP_2856 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (2/1); new base C (19/10); total (21/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGAACACCACGGCCCCGCCCGGCAGGACGGACAGCGGCATTTGTGCAGCTTCGCTCACGCTGGCCAGGCACAGCAAAAACGCCAAGGCGAAAATACGCATGATCGGATGCCTTACGGTGTGTTGAAGAAA‑GG‑CCCC‑CCGAAGGGGGCCTCAAGCACAGCGGTCAGAACGAAGTGTTGGAGATGGCCAGCGAGTTGCTTTGCTGGTTGCCCACACCGGCTGCTACGTTCACGCCCAGGTTACCGCTGCCACCGTTCACC > NC_002947/3260544‑3260801 | tGAACACCACGGCCCCGCCCGGCAGGACGGACAGCGGCATTTGTGCAGCTTCGCTCACGCTGGCCAGGCACAGCAAAAACGCCAAGGCGAAAATACGCATGATCGGATGCCTTACGGTGTGTTGAAGAAA‑GG‑cccc > 1:875439/1‑136 (MQ=255)tGAACACCACGGCCCCGCCCGGCAGGACGGACAGCGGCATTTGTGCAGCTTCGCTCACGCTGGCCAGGCACAGCAAAAACGCCAAGGCGAAAATACGCATGATCGGATGCCTTACGGTGTGTTGAAGAAA‑GG‑cccc > 2:748242/1‑136 (MQ=255)tGAACACCACGGCCCCGCCCGGCAGGACGGACAGCGGCATTTGTGCAGCTTCGCTCACGCTGGCCAGGCACAGCAAAAACGCCAAGGCGAAAATACGCATGATCGGATGCCTTACGGTGTGTTGAAGAAA‑GG‑cccc > 2:823105/1‑136 (MQ=255)tGAACACCACGGCCCCGCCCCGCAGGACGGACAGCGGCATTTGTGCAGCTTCGCTCACGCTGGCCAGGCACAGCAAAAACGCCAAGGCGAAAATACGCATGATCGGATGCCTTACGGTGTGTTGAAGAAA‑GG‑cccc > 1:313185/1‑136 (MQ=255) gAACACCACGGCCCCGCCCGGCAGGACGGACAGCGGCATTTGTGCAGCTTCGCTCACGCTGGCCAGGCACAGCAAAAACGCCAAGGCGAAAATACGCATGATCGGATGCCTTACGGTGTGTTGAAGAAA‑GG‑cccc‑c > 1:1206831/1‑136 (MQ=255) gAACACCACGGCCCCGCCCGGCAGGACGGACAGCGGCATTTGTGCAGCTTCGCTCACGCTGGCCAGGCACAGCAAAAACGCCAAGGCGAAAATACGCATGATCGGATGCCTTACGGTGTGTTGAAGAAA‑GG‑cccc‑c > 1:1139284/1‑136 (MQ=255) acacCACGGCCCCGCCCGGCAGGACGGACAGCGGCATTTGTGCAGCTTCGCTCACGCTGGCCAGGCACAGCAAAAACGCCAAGGCGAAAATACGCATGATCGGATGCCTTACGGTGTGTTGAAGAAA‑GG‑cccc‑ccc > 2:236633/1‑135 (MQ=255) accacGGCCCCGCCCGGCAGGACGGACAGCCGCATTTGTGCAGCTTCGCTCACGCTGGCCAGGCACAGCAAAAACGCCAAGCCGAAAATACGCATGATCGGATGCCTTACGGTGTGTTCAAGAAA‑GG‑cccc‑cccga > 1:69203/1‑133 (MQ=255) cacGGCCCCGCCCGGCAGGACGGACAGCGGCATTTGTGCAGCTTCGCTCACGCTGGCCAGGCACAGCAAAAACGCCAAGGCGAAAATACGCATGATCGGATGCCTTACGGTGTGTTGAAGAAA‑GG‑cccc‑cccgaag < 2:875439/136‑6 (MQ=255) cacGGCCCCGCCCGGCAGGACGGACAGCGGCATTTGTGCAGCTTCGCTCACGCTGGCCAGGCACAGCAAAAACGCCAAGGCGAAAATACGCATGATCGGATGCCTTACGGTGTGTTGAAGAAA‑GG‑cccc‑cccgaag < 2:641422/136‑6 (MQ=255) cacGGCCCCGCCCGGCAGGACGGACAGCGGCATTTGTGCAGCTTCGCTCACGCTGGCCAGGCACAGCAAAAACGCCAAGGCGAAAATACGCATGATCGGATGCCTTACGGTGTGTTGAAGAAA‑GG‑cccc‑cccgaag < 2:619630/136‑6 (MQ=255) ggCCCCGCCCGGCAGGACGGACAGCGGCATTTGTGCAGCTTCGCTCACGCTGGCCAGGCACAGCAAAAACGCCAAGGCGAAAATACGCATGATCGGATGCCTTACGGTGTGTTGAAGAAA‑GGCCCCC‑CCGAAgggg > 1:1022204/1‑136 (MQ=255) ggCCCCGCCCGGCAGGACGGACAGCGGCATTTGTGCAGCTTCGCTCACGCTGGCCAGGCACAGCAAAAACGCCAAGGCGAAAATACGCATGATCGGATGCCTTACGGTGTGTTGAAGAAA‑GG‑CCCC‑CCGAAggggg > 1:846715/1‑136 (MQ=255) ccgGCAGGACGGACAGCGGCATTTGTGCAGCTTCGCTCACGCTGGCCAGGCACAGCAAAAACGCCAAGGCGAAAATACGCATGATCGGATGCCTTACGGTGTGTTGAAGAAA‑GGCCCCC‑CCGAAGGGGGCCTCAAg > 1:113926/1‑136 (MQ=255) cgGCAGGACGGACAGCGGCATTTGTGCAGCTTCGCTCACGCTGGCCAGGCACAGCAAAAACGCCAAGGCGAAAATACGCATGATCGGATGCCTTACTGTGTGTTGAAGAAA‑GGCCCCC‑CCGAAGGGGGCCTCAAGc < 1:644629/136‑1 (MQ=255) cgGCAGGACGGACAGCGGCATTTGTGCAGCTTCGCTCACGCTGGCCAGGCACAGCAAAAACGCCAAGGCGAAAATACGCATGATCGGATGCCTTACGGTGTGTTGAAGAAA‑GGCCCCC‑CCGAAGGGGGCCTCAAGc < 1:196138/136‑1 (MQ=255) taGCGGTATTTGTGCAGCTTCGCTCACGCTGGCCAGGCACAGCAAATACGCCAAGGCGAAAATACGCATGATCGGATGCCTTACGGTGTGTTGAAGAAA‑GGCCCCC‑CCGAAGGGGGCCTCAAGCACAGCGGTCAGa < 2:155519/135‑1 (MQ=255) cAGCGGCATTTGTGCAGCTTCGCTCACGCTGGCCAGGCACAGCAAAAACGCCAAGGCGAAAATACGCATGATCGGATGCCTTACGGTGTGTTGAAGAAA‑GGCCCCC‑CCGAAGGGGGCCTCAAGCACAGCGGTCAGa < 1:40568/136‑1 (MQ=255) gCGGCATTTGTGCAGCTTCGCTCACGCTGGCCAGGCACAGCAAAAACGCCAAGGCGAAAATACGCATGATCGGATGCCTTACGGTGTGTTGAAGAAA‑GGCCCCC‑CCGAAGGGGGCCTCAAGCACAGCGGTCAGAAc > 2:804438/1‑136 (MQ=255) aaTTTGTGCAGATTCGCACACGCTGGCCAGGCACAGAAAAAACGCATAGGCTAAAATACGCATGATCGTATCCCTTACGGGGTGTTTAATAAA‑GGCCCCC‑CCGAAGGGGGCCTCAAGCACAGCGGTCAGAACTAAg < 1:413417/135‑1 (MQ=255) aTTTGTGCAGCTTCGCTCACGCTGGCCAGGCACAGCAAAAACGCCAAGGCGAAAATACGCATGATCGGATGCCTTACGGTGTGTTGAAGAAA‑GGCCCCC‑CCGAAGGGGGCCTCAAGCACAGCGGTCAGAACGAAgt > 2:894214/1‑136 (MQ=255) aTTTGTGCAGCTTCGCTCACGCTGGCCAGGCACAGCAAAAACGCCAAGGCGAAAATACGCATGATCGGATGCCTTACGGTGTGTTGAAGAAA‑GGCCCCC‑CCGAAGGGGGCCTCAAGCACAGCGGTCAGAACGAAgt > 2:1228349/1‑136 (MQ=255) cTCACGCTGGCCAGGCACAGCAAAAACGCCAAGGCGAAAATACGCATGATCGGATGCCTTACGGTGTGTTGAAGAAA‑GGCCCCC‑CCGAAGGGGGCCTCAAGCACAGCGGTCAGAACGAAGTGTTGGAGATGGCCAg > 1:948450/1‑136 (MQ=255) tCACGCTGGCCAGGCACAGCAAAAACGCCAAGGCGAAAATACGCATGATCGGATGCCTTACGGTGTGTTGAAGAAA‑GGCCCCC‑CCGAAGGGGGCCTCAAGCACAGCGGTCAGAACGAAGTGTTGGAGATGGCCAGc < 2:1139284/136‑1 (MQ=255) tCACGCTGGCCAGGCACAGCAAAAACGCCAAGGCGAAAATACGCATGATCGGATGCCTTACGGTGTGTTGAAGAAA‑GGCCCCC‑CCGAAGGGGGCCTCAAGCACAGCGGTCAGAACGAAGTGTTGGAGATGGCCAGc < 2:1206831/136‑1 (MQ=255) tCACGCTGGCCAGGCACAGCAAAAACGCCAAGGCGAAAATACGCATGATCGGATGCCTTACGGTGTGTTGAAGAAA‑GGCCCCC‑CCGAAGGGGGCCTCAAGCACAGCGGTCAGAACGAAGTGTTGGAGATGGCCAGc < 2:726522/136‑1 (MQ=255) tGGCCAGGCACAGCAAAAACGCCAAGGCGAAAATACGCATGATCGGATGCCTTACGGTGTGTTGAAGAAC‑GGCCCCC‑CCGAAGGGGGCCTCAAGCACAGCGGTCAGAACGAAGTGTTGGAGATGGCCAGCGAGttg > 2:1056683/1‑136 (MQ=255) aaaaCGCCAAGGCGAAAATACGCATGATCGGATGCCTTACGGTGTGTTGAAGAAA‑GGCCCCC‑CCGAAGGGGGCCTCAAGCACAGCGGTCAGAACGAAGTGTTGGAGATGGCCAGCGAGATGCTTTGCTGGTTGccc > 1:542337/1‑136 (MQ=255) gCCAAGGCGAAAATACGCATGATCGGATGCCTTACGGTGTGTTGAAGAAA‑GGCCCCC‑CCGAAGGGGGCCACAAGCACAGCGGTCAGAACGAAGTGTTGGAGATGGCCAGCGAGTTGCTATGCTGGTTGCCCACAcc > 1:426757/1‑136 (MQ=255) aaaaTACGCATGATCGGATGCCTTACGGTGTGTTGAAGAAA‑GGCCCCC‑CCGAAGGGGGCCTCAAGCACAGCGGTCAGAACGAAGTGTTGGAGATGGCCAGCGAGTTGCTTTGCTGGTTGCCCACACCGGCTGCTAc < 1:54045/136‑1 (MQ=255) cGCATGATCGGATGCCTTACGGTGTGTTGAAGAAA‑GGCCCCC‑CCGAAGGGGGCCTCAAGCACAGCGGTCAGAACGAAGTGTTGGAGATGGCCAGCGAGTTGCTTTGCTGGTTGCCCACACCGGCTGCTACGTTCAc < 2:113926/136‑1 (MQ=255) tGATCGGATGCCTTACGGTGTGTTGAAGAAA‑GGCCCCC‑CCGAAGGGGGCCTCAAGCACAGCGGTCAGAACGAAGTGTTGGAGATGGCCAGCGAGTTGCTTTGCTGGTTGCCCACACCGGCTGCTACGTTCACGccc > 2:1143317/1‑136 (MQ=255) gATCGGATGCCTTACGGTGTGTTGAAGAAA‑GGCCCCC‑CCGAAGGGGGCCTCAAGCACAGCGGTCAGAACGAAGTGTTGGAGATGGCCAGCGAGTTGCTTTGCTGGTTGCCCACACCGGCTGCTACGTTCACGCCCa > 1:138069/1‑136 (MQ=255) ggATGCCTTACGGTGTGTTGAAGAAATGC‑CCCC‑CCGAAGGGGTCCTCAAGCACACCGGTCAGAACGAAGAGTTGGAGATGGCCAGCGAGTTGCTTTGCTGGTAGCCAACACCGGCTGCTACGTTCACGCCCAGGtt > 1:1140478/1‑136 (MQ=255) ggATGCCTAACGGTGTGTTGAAGAAA‑GGCCCCC‑CCGAAGGGCGCCTCAAGCACAGCGGTCAGAACGAAGTGTTGGAGATGGCCAGCGAGTTGCTATGCTGGTTGCCCACACCGCCTGCTACGTTCACGCCCAgcta > 1:1110354/1‑133 (MQ=255) cGGTGTGTTGAAGAAA‑GGCCCCC‑CCGAAGGGGGCCTCAAGCACAGCGGTCAGAACGAAGTGTTGGAGATGGCCAGCGAGTTGCTTTGCTGGTTGCCCACACCGGCTGCTACGTTCACGCCCAGGTTACCGCTGCCa > 2:722628/1‑136 (MQ=255) cGGTGTGTTGAAGAAA‑GGCCCCC‑CCGAAGGGGGCCTCAAGCACAGCGGTCAGAACGAAGTGTTGGAGATGGCCAGCGAGTTGCTTTGCTGGTTGCCCACACCGGCTGCTACGTTCACGCCCAGGTTACCGCTGCCa > 2:1181794/1‑136 (MQ=255) ggTGTGTTGAAGAAA‑GGCCCCC‑CCGAAGGGGGCCTCAAGCACAGCGGTCAGAACGAAGTGTTGGAGATGGCCAGCGAGTTGCTTTGCTGGTTGCCCACACCGGCTGCTACGTTCACGCCCAGGTTACCGCTGCCAc > 1:1232650/1‑136 (MQ=255) tGAAGAAA‑GGCCCCC‑CCGAAGGGGGCCTCAAGCACAGCGGTCAGAACGAAGTGTTGGAGATGGCCAGCGAGTTGCTTTGCTGGTTGCCCACACCGGCTGCTACGTTCACGCCCAGGTTACCGCTGCCACCGTTCAc > 1:465151/1‑136 (MQ=255) tGAAGAAA‑GGCCCCC‑CCGAAGGGGGCCTCAAGCACAGCGGTCAGAACGAAGTGTTGGAGATGGCCAGCGAGTTGCTTTGCTGGTTGCCCACACCGGCTGCTACGTTCACGCCCAGGTTACCGCTGCCACCGTTCAc > 1:1355366/1‑136 (MQ=255) tGAAGAAA‑GGCCCCC‑CCGAAGGGGGCCTCAAGCACAGCGGTCAGAACGAAGTGTTGGAGATGGCCAGCGAGTTGCTTTGCTGGTTGCCCACACCGGCTGCTACGTTCACGCCCAGGTTACCGCTGCCACCGTTCAc > 1:905172/1‑136 (MQ=255) tGAAGAAA‑GGCCCCC‑CCGAAGGGGGCCTCAAGCACAGCGGTCAGAACGAAGTGTTGGAGATGGCCAGCGAGTTGCTTTGCTGGTTGCCCACACCGGCTGCTACGTTCACGCCCAGGTTACCGCTGCCACCATTCAc > 1:134542/1‑136 (MQ=255) gaagaaA‑GG‑CCCCGCCGAAGGGGGCCTCAAGCACAGCGGTCTGAACGAAGTGTTGGAGATGGCCAGCGAGTTGCTTTGCTGGTTGCCCACACCGGCTGCTACGTTCACGCCGAGGTTACCGCTGCCACCGTTCAcc < 2:69203/136‑1 (MQ=255) | TGAACACCACGGCCCCGCCCGGCAGGACGGACAGCGGCATTTGTGCAGCTTCGCTCACGCTGGCCAGGCACAGCAAAAACGCCAAGGCGAAAATACGCATGATCGGATGCCTTACGGTGTGTTGAAGAAA‑GG‑CCCC‑CCGAAGGGGGCCTCAAGCACAGCGGTCAGAACGAAGTGTTGGAGATGGCCAGCGAGTTGCTTTGCTGGTTGCCCACACCGGCTGCTACGTTCACGCCCAGGTTACCGCTGCCACCGTTCACC > NC_002947/3260544‑3260801 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |