| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 1,485,547 | (G)6→7 | coding (429/1098 nt) | yhdY → | amino acid ABC transporter permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,485,541 | 1 | . | G | 92.9% | 91.0 / 1.0 | 28 | coding (423/1098 nt) | yhdY | amino acid ABC transporter permease |
| Reads supporting (aligned to +/- strand): ref base . (2/0); new base G (15/11); total (17/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.05e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.95e-01 | |||||||||||
TGGCGTGTGGACCTGACCGTGTGGCTTGCCGTGCTCGGCGCCGCGCCGCTGTTCATCAAGCGTTTCCCGCGCAAAGCCTTCTACGGCCTGGGCTTCCTGGTGCTGTACCCGGTGCTGGCCTACACCCTGCTGCAC‑GGGGGGTATCTGGGCCTGGAAAGCGTACCGACCAGCCAGTGGGGCGGGCTGATGCTGACCCTGGTGATCGCCACCGTGGGCATCGTCGGCGCCTTGCCGCTGGGCATCCTGCTGGCACTGGGCCGGCGTTC > NC_002947/1485407‑1485672 | tGGCGTGTGGACCTGACCGTGTGGCTTGCCGTGCTCGGCGCCGCGCCGCTGTTCATCAAGCGTTTCCCGCGCAAAGCCTTCTACGGCCTGGGCTTCCTGGTGCTGTACCCGGTGCTGGCCTACACCCTGCTGCAC‑g > 1:81241/1‑136 (MQ=255)tGGCGTGTGGACCTGACCGTGTGGCTTGCCGTGCTCGGCGCCGCGCCGCTGTTCATCAAGCGTTTCCCGCGCAAAGCCTTCTACGGCCTGGGCTTCCTGGTGCTGTACCCGGTGCTGGCCTACACCCTGCTGCAC‑g > 2:323068/1‑136 (MQ=255)tGGCGTGTGGACCTGACCGTGTGGCTTGCCGTGCTCGGCGCCGCGCCGCTGTTCATCAAGCGTTTCCCGCGCAAAGCCTTCTACGGCCTGGGCTTCCTGGTGCTGTACCCGGTGCTGGCCTACACCCTGCTGCAC‑g > 1:362261/1‑136 (MQ=255) aCCTGACCGTGTGGCTTGCCGTGCTCGGCGCCGCGCCGCTGTTCATCAAGCGTTTCCCGCGCAAAGCCTTCTACGGCCTGGGCTTCCTGGTGCTGTACCCGGTGCTGGCCTACACCCTGCTGCAC‑gggggggtatc > 1:1281282/1‑131 (MQ=255) aCCTGACCGTGTGGCTTGCCGTGCTCGGCGCCGCGCCGCTGTTCATCAAGCGTTTCCCGCGCAAAGCCTTCTACGGCCTGGGCTTCCTGGTGCTGTACCCGGTGCTGGCCTACACCCTGCTGCAC‑gggggggtata > 2:1110802/1‑131 (MQ=255) cGTGTGGCTTGCCGTGCTCGGCGCCGCGCCGCTGTTCATCAAGCGTTTCCCGCGCAAAGCCTTCTACGGCCTGGGCTTCCTGGTGCTGTACCCGGTGCTGGCCTACACCCTGCTGCACGGGGGGGTATCTGGGCCt > 1:443807/1‑136 (MQ=255) ggCTTGCCGTGCTCGGCGCCGCCCCGCTGTTCATCAAGCGTTTCCCGCGCAAAGCCTTCTACGGCCTGGGCTTCCTGGTGCTGTACCCGGTGCTGGCCTACACCCTGCTGCACGGGGGGGTATCTGGGCCTGGaaa > 2:110277/1‑136 (MQ=255) gCTTGCCGTGCTCGGCGCCGCGCCGCTGTTCATCAAGCGTTTCCCGCGCAAAGCCTTCTACGGCCTGGGCTTCCTGGTGCTGTACCCGGTGCTGGCCTACACCCTGCTGCACGGGGGGGTATCTGGGCCTGGAAAg > 1:908348/1‑136 (MQ=255) gCTTGCCGTGCTCGGCGCCGCGCCGCTGTTCATCAAGCGTTTCCCGCGCAAAGCCTTCTACGGCCTGGGCTTCCTGGTGCTGTACCCGGTGCTGGCCTACACCCTGCTGCACGGGGGGGTATCTGGGCCTGGAAAg < 1:260351/136‑1 (MQ=255) ttGCCGTGCTCGGCGCCGCGCCGCTGTTCATCAAGCGTTTCCCGCGCAAAGCCTTCTACGGCCTGGGCTTCCTGGTGCTGTACCCGGTGCTGGCCTACACCCTGCTGCACGGGGGGGTATCTGGGCCTGGAAAGCg < 2:1329025/136‑1 (MQ=255) ccGTGCTCGGCGCCGCGCCGCTGTTCATCAAGCGTTTCCCGCGCAAAGCCTTCTACGGCCTGGGCTTCCTGGTGCTGTACCCGGTGCTGGCCTACACCCTGCTGCACGGGGGGGTATCTGGGCCTGGAAAGCGTAc > 1:522886/1‑136 (MQ=255) gTGCTCGGCGCCGCGCCGCTGTTCATCAAGCGTTTCCCGCGCAAAGCCTTCTACGGCCTGGGCTTCCTGGTGCTGTACCCGGTGCTGGCCTACACCCTGCTGCACGGGGGGGTATCTGGGCCTGGAAAGCGTACCg < 1:323068/136‑1 (MQ=255) cgcTGTTCATCAAGCGTTTCCCGCGCAAAGCCTTCTACGGCCTGGGCTTCCTGGTGCTGTACCCGGTGCTGGCCTACACCCTGCTGCACGGGGGGGTATCTGGGCCTGGAAAGCGTACCGACCAGCCAGTGgggcg < 1:810962/136‑1 (MQ=255) cgcTGTTCATCAAGCGTTTCCCGCGCAAAGCCTTCTACGGCCTGGGCTTCCTGGTGCTGTACCCGGTGCTGGCCTACACCCTGCTGCACGGGGGGGTATCTGGGCCTGGAAAGCGTACCGACCAGCCAGTGgggcg < 1:910018/136‑1 (MQ=255) aaaGCCTTCTACGGCCTGGGCTTCCTGGTGCTGTACCCGGTGCTGGCCTACACCCTGCTGCACGGGGGGGTATCTGGGCCTGGAAAGCGTACCGACCAGCCAGTGGGGCGGGCTGATGCTGACCCTGGTGATCGcc < 1:706831/136‑1 (MQ=255) cTTCCTGGTGCTGTACCCGGTGCTGGCCTACACCCTGCTGCACGGGGGGGTATCTGGGCCTGGAAAGCGTACCGACCAGCCAGTGGGGCGGGCTGATGCTGACCCTGGTGATCGCCACCGTGGGCATCGTCGgcgc > 2:48601/1‑136 (MQ=255) tGTACCCGGTGCTGGCCTACACCCTGCTGCACGGGGGGGTATCTGGGCCTGGAAAGCGTACCGACCAGCCAGTGGGGCGGGCTGATGCTGACCCTGGTGATCGCCACCGTGGGCATCGTCGGCGCCTTGCCGCTgg > 1:1353885/1‑136 (MQ=255) gTACCCGGTGCTGGCCTACACCCTGCTGCACGGGGGGGTATCTGGGCCTGGAAAGCGTACCGACCAGCCAGTGGGGCGGGCTGATGCTGACCCTGGTGATCGCCACCGTGGGCATCGTCGGCGCCTTGCCGCTggg < 2:294506/136‑1 (MQ=255) gTACCCGGTGCTGGCCTACACCCTGCTGCACGGGGGGGTATCTGGGCCTGGAAAGCGTACCGACCAGCCAGTGGGGCGGGCTGATGCTGACCCTGGTGATCGCCACCGTGGGCATCGTCGGCGCCTTGCCGCTggg < 2:522886/136‑1 (MQ=255) ccGGTGCTGGCCTACACCCTGCTGCACGGGGGGGTATCTGGGCCTGGAAAGCGTACCGACCAGCCAGTg < 2:1025502/69‑1 (MQ=255) ccGGTGCTGGCCTACACCCTGCTGCACGGGGGGGTATCTGGGCCTGGAAAGCGTACCGACCAGCCAGTg > 1:1025502/1‑69 (MQ=255) ccGGTGCTGGCCTACACCCTGCTGCACGGGGGGGTATCTGGGCCTGGAAAGCGTACCGACCAGCCAGTGGGGCGGGCTGATGCTGACCCTGGTGATCGCCACCGTGGGCATCGTCGGCGCCTTGCCGCTGGGCATc > 2:454750/1‑136 (MQ=255) cTGGCCTACACCCTGCTGCACGGGGGGGTATCTGGGCCTGGAAAGCGTACCGACCAGCCAGTGGGGCGGGCTGATGCTGACCCTGGTGATCGCCACCGTGGGCATCGTCGGCGCCTTGCCGCTGGGCATCctgctg < 1:888576/136‑1 (MQ=255) tACACCCTGCTGCAC‑GGGGGGTATCTGGGCCTGGAAAGCGTACCGACCAGCCAGTGGGGCGGGCTGATGCTGACCCTGGTGATCGCCACCGTGGGCATCGTCGGCGCCTTGCCGCTGGGCATCCTGCTGGCACTgg > 1:305676/1‑136 (MQ=255) ccTGCTGCACGGGGGGGTATCTGGGCCTGGAAAGCGTACCGACCAGCCAGTGGGGCGGGCTGATGCTGACCCTGGTGATCGCCACCGTGGGCATCGTCGGCGCCTTGCCGCTGGGCATCCTGCTGGCACTGGGCCg > 2:79446/1‑136 (MQ=255) ccTGCTGCACGGGGGGGTATCTGGGCCTGGAAAGCGTACCGACCAGCCAGTGGGGCGGGCTGATGCTGACCCTGGTGATCGCCACCGTGGGCATCGTCGGCGCCTTGCCGCTGGGCATCCTGCTGGCACTGGGCCg > 1:1040490/1‑136 (MQ=255) ccTGCTGCACGGGGGGGTATCTGGGCCTGGAAAGCGTACCGACCAGCCAGTGGGGCGGGCTGATGCTGACCCTGGTGATCGCCACCGTGGGCATCGTCGGCGCCTTGCCGCTGGGCATCCTGCTGGCACTGGGCCg > 1:618751/1‑136 (MQ=255) ccTGCTGCACGGGGGGGTATCTGGGCCTGGAAAGCGTACCGACCAGCCAGTGGGGCGGGCTGATGCTGACCCTGGTGATCGCCACCGTGGGCATCGTCGGCGCCTTGCCGCTGGGCATCCTGCTGGCACTGGGCCg > 1:572485/1‑136 (MQ=255) ccTGCTGCACGGGGGGGTATCTGGGCCTGGAAAGCGTACCGACCAGCCAGTGGGGCGGGCTGATGCTGACCCTGGTGATCGCCACCGTGGGCATCGTCGGCGCCTTGCCGCTGGGCATCCTGCTGGCACTGGGCCg < 1:28428/136‑1 (MQ=255) tgcACGGGGGGGTATCTGGGCCTGGAAAGCGTACCGACCAGCCAGTGGGGCGGGCTGATGCTGACCCTGGTGATCGCCACCGTGGGCATCGTCGGCGCCTTGCCGCTGGGCATCCTGCTGGCACTGGGCCGGCGtt > 2:1047368/1‑136 (MQ=255) tgcACGGGGGGGTATCTGGGCCTGGAAAGCGTACCGACCAGCCAGTGGGGCGGGCTGATGCTGACCCTGGTGATCGCCACCGTGGGCATCGTCGGCGCCTTGCCGCTGGGCATCCTGCTGGCACTGGGCCGGCGtt > 1:787428/1‑136 (MQ=255) tgcACGGGGGGGTATCTGGGCCTGGAAAGCGTACCGACCAGCCAGTGGGGCGGGCTGATGCTGACCCTGGTGATCGCCACCGTGGGCATCGTCGGCGCCTTGCCGCTGGGCATCCTGCTGGCACTGGGCCGGCGtt > 1:1231799/1‑136 (MQ=255) tgcAC‑GGGGGGTATCTGGGCCTGGAAAGCGTACCGACCAGCCAGTGGGGCGGGCTGATGCTGACCCTGGTGATCGCCACCGTGGGCATCGTCGGCGCCTTGCCGCTGGGCATCCTGCTGGCACTGGGCCGGCGTTc > 2:853729/1‑136 (MQ=255) | TGGCGTGTGGACCTGACCGTGTGGCTTGCCGTGCTCGGCGCCGCGCCGCTGTTCATCAAGCGTTTCCCGCGCAAAGCCTTCTACGGCCTGGGCTTCCTGGTGCTGTACCCGGTGCTGGCCTACACCCTGCTGCAC‑GGGGGGTATCTGGGCCTGGAAAGCGTACCGACCAGCCAGTGGGGCGGGCTGATGCTGACCCTGGTGATCGCCACCGTGGGCATCGTCGGCGCCTTGCCGCTGGGCATCCTGCTGGCACTGGGCCGGCGTTC > NC_002947/1485407‑1485672 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |