| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 652785 | 48 (0.910) | 27 (0.600) | 7/224 | 2.1 | 57.0% | coding (1961/1962 nt) | ctpL | methyl‑accepting chemotaxis protein CtpL |
| ? | NC_002947 | = 4810126 | 0 (0.000) | intergenic (‑268/‑287) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 | |||||
GTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGC > NC_002947/4809991‑4810197 | gtgtgtATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTgg > 1:521916/1‑136 (MQ=255)gtgtgtATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTgg > 2:628468/1‑136 (MQ=255) gtATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGgaga < 2:324026‑M2/136‑5 (MQ=255) aTGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGTGAGGTGTTCGCCGGGGGATTTTCAGCGCCAGGGAGGTGTTCGCCCGGAGAGTTTCAGCGCCTGTgagatcgagcgccc < 2:1048269‑M2/136‑15 (MQ=255) gggCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGgagatcgagcgccgcc < 1:1069718‑M2/136‑17 (MQ=255) gggCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGgagatcgagcgccgcc < 1:679938‑M2/136‑17 (MQ=255) gggCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGgagatcgagcgccgcc < 1:1067659‑M2/136‑17 (MQ=255) gggCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGgagatcgagcgccgcc < 1:545875‑M2/136‑17 (MQ=255) gggCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCAGGgagaaagagcgccgcc < 2:1008604‑M2/136‑17 (MQ=255) gCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTTGGATATACACCCccgcccc > 2:162076/1‑135 (MQ=37) gCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGgagatcgagcgccgcccg < 1:182018‑M2/136‑19 (MQ=255) gCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGgagatcgagcgccgcccg < 1:598541‑M2/136‑19 (MQ=255) ttGGCGGGTTGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGgagatcgagcgccgcccgcgcggcgcttcgcg > 1:488778‑M2/1‑104 (MQ=255) gggTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGgagatcgagtgccgcccgcgcggcgcttcgcgggtaa > 1:947257‑M2/1‑99 (MQ=255) gtgtgcagggcGTGGGCGGGGTTCGGCGGGGGATTTTCAGCGCCGGGGAGGGGTTCGCCGGGCGAGTTTCAGCGCCTGGgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgttt > 1:238008‑M2/6‑79 (MQ=255) gTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgttt > 1:600530‑M2/1‑79 (MQ=255) gTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgttt > 1:362376‑M2/1‑79 (MQ=255) gTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgttt > 1:1006897‑M2/1‑79 (MQ=255) ttttCAGGGCCTGGGTGGTGTTCGCGGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGTAGAGTTTCAGCGCCTGGtagatcgagcgccgcccgcgcggggcttcgcgggtaaacccgctcctacgtttgtttc > 1:604338‑M2/1‑78 (MQ=255) gtttcAGCGCCGGGGAGGTGTTCGCCGGGGTATTTTCAGGCCCTGGGAGGGGGTCGCCGGGAGAGTTCCAGCGCCTGGgagatggcgcgccgcccgcggggcgcttcgcgggtaaacccgctcctacgtttgtttc > 2:233015‑M2/2‑78 (MQ=255) tGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGGGTTCGCGGGGAGAGTTTCTGCGCCTGGgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattat > 2:1187199‑M2/1‑67 (MQ=255) ggggaGGTGTTCGCGGGGGGTTTTTCAGCGCTGGGGTGGTGTTCGCCGGGAGTGTTTCAGCGCCTGGgatagcgtgcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattat > 1:990359‑M2/2‑67 (MQ=255) tgaGGTGTTTGCCGGAGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattc > 1:984390‑M2/2‑65 (MQ=255) ttCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGTgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttg < 2:123890‑M2/112‑55 (MQ=255) ttCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGTgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttg > 1:123890‑M2/1‑58 (MQ=255) gCCGGAGGATTTTCAGCGCCTGTgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattat < 1:1057251‑M2/92‑70 (MQ=255) gCCGGAGGATTTTCAGCGCCTGTgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattat > 2:1057251‑M2/1‑23 (MQ=255) gcCTGTgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattat > 2:853800‑M2/1‑6 (MQ=255) gcCTGTgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattat < 1:853800‑M2/75‑70 (MQ=255) ccTGTgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattat > 2:1200510‑M2/1‑5 (MQ=255) ccTGTgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattat < 1:643370‑M2/74‑70 (MQ=255) ccTGTgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattat > 2:643370‑M2/1‑5 (MQ=255) ccTGTgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattat < 1:1200510‑M2/74‑70 (MQ=255) ccTGGgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattat < 1:829646‑M2/74‑70 (MQ=255) ccTGGgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattat < 1:43632‑M2/74‑70 (MQ=255) ccTGGgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattat > 2:333520‑M2/1‑5 (MQ=255) ccTGGgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattat > 2:43632‑M2/1‑5 (MQ=255) ccTGGgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattat < 1:333520‑M2/74‑70 (MQ=255) ccTGGgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattat > 2:829646‑M2/1‑5 (MQ=255) | GTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGC > NC_002947/4809991‑4810197 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |