| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,148,800 | 0 | T | G | 50.0% | 0.5 / 12.8 | 26 | T151P (ACG→CCG) | PP_1007 | transmembrane sensor |
| Reads supporting (aligned to +/- strand): ref base T (8/5); new base G (13/0); total (21/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.91e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AGTAAGCCTCGCCCTGTAGCAGGCGGGCGACCTGGCGGCCGTCCTGGCGTTCGCTGGCGAATGCCGAATTGGTGTTGAGCAGCACTTTTGCGCCGTCTTCCAGTTGCAGGCGCTGGCGCTCGCCGACCACCGTAAGGTGGTCGGCCTGCAGGC‑GCATGGGCAGGTTACCGACGGTGAATAGCCCGACCAGCAGCAGCGCTGCGGTGGCCAGGGGTTTCCAGTGACTGCGCAGGCGCCCGCGCCATGACCTGCGTTGC > NC_002947/1148668‑1148924 | aGTAAGCCTCGCCCTGTAGCAGGCGGGCGACCTGGCGGCCGTCCTGGCGTTCGCTGGCGAATGCCGAATTGGTGTTGAGCAGCACTTTTGCGCCGTCTTCCAGTTGCAGGCGCTGGCGCTCGCCGCCCCCCCTAAg > 1:107891/1‑136 (MQ=255)aGTAAGCCTCGCCCTGTAGCAGGCGGGCGACCTGGCGGCCGTCCTGGCGTTCGCTGGCGAATGCCGAATTGGTGTTGAGCAGCACTTTTGCGCCGTCTTCCAGTTGCAGGCGCTGGCGCTCGCCGACCACCGGAAg > 2:730902/1‑136 (MQ=255)aGTAAGCCTCGCCCTGTAGCAGGCGGGCGACCTGGCGGCCGTCCTGGCGTTCGCTGGCGAATGCCGAATTGGTGTTGAGCAGCACTTTTGCGCCGTCTTCCAGTTGCAGGCGCTGGCGCTCGCCCACCACCGTaat > 1:511796/1‑135 (MQ=255)aGTAAGCCTCGCCCTGTAGCAGGCGGGCGACCTGGCGGCCGTCCTGGCGTTCGCTGGCGAATGCCGAATTGGTGTTGAGCAGCACTTTTGCGCCGGCTTCCAGTTGCAGGCGCTGGCGCTCGCCGCCCACCGGAAg > 2:1140845/1‑136 (MQ=255) cTGTAGCAGGCGGGCGACCTGGCGGCCGTCCTGGCGTTCGCTGGCGAATGCCGAATTGGTGTTGAGCAGCACTTTTGCGCCGTCTTCCAGTTGCAGGCGCTGGCGCTCGCCGACCACCGTAAGGTGGTCGGCCTGc > 2:33774/1‑136 (MQ=255) gggcgACCTGGCGGCCGTCCTGGCGTTCGCTGGCGAATGCCGAATTGGTGTTGAGCAGCACTTTTGCGCCGTCTTCCAGTTGCAGGCGCTGGCGCTCGCCGACCCCCGTAAGGTGGTCGGCCAGCAGGC‑GGATggg > 2:693824/1‑136 (MQ=255) ggcgACCTGGCGGCCGTCCTGGCGTTCGCTGGCGAATGCCGAATTGGTGTTGAGCAGCACTTTTGCGCTGTCTTCCAGTTGCAGGCGCTGGCGCTCGCCGCCCACCCGTAGGGGGTCGGGCGGCAGGG‑GGATgggg > 1:592992/1‑135 (MQ=255) ggcgACCTGGCGGCCGTCCTGGCGTTCGCTGGCGAATGCCGAATTGGTGTTGAGCAGCACTTTTGCGCCGTCTTCCAGTTGCAGGCGCTGGCGCTCGCCGCCCCCCCGAAGGTGGTAGGCCGGCAGGC‑GCCTgggg > 1:1005176/1‑135 (MQ=255) ggcgACCTGGCGGCCGTCCTGGCGTTCGCTGGCGAATGCCGAATTGGTGTTGAGCAGCACTTTTGCGCCGTCTTCCAGTTGCAGGCGCTGGCGCTCGCCGCCCACCGGAAAGGGGTGGGCCGGGCGgc‑gccggggg > 1:1116978/1‑130 (MQ=255) ggcgACCTGGCGGCCGTCCTGGCGTTCGCTGGCGAATGCCGAATTGGTGTTGAGCAGCACTTTTGCGCCGTCTTCCAGTTGCAGGCGCTGGCGCTCGCCGACCACCGTAAGGTGGTCGGCCTGCAGGC‑GCATGGGc > 1:536291/1‑136 (MQ=255) cccgggcggcCGGCCGGGCGTCCGCTGGCGAATGCCGAATTGGTGTTCAGCAGCACTTTTGCGCCGTCTTCCAGTGGCAGGCGCTGGCGCTCGCCGACCACCGTAAGGTGGTCGGCCTGCAGGC‑GCATGGGCAGGt < 2:498900/132‑1 (MQ=255) gcCGTCCTGGCGTTCGCTGGCGAATGCCGAATTGGTGTTGAGCAGCACTTTTGCGCCGTCTTCCAGTTGCAGGCGCTGGCGCTCGCCGACCACCGTAAGGTGGTCGGCCTGCAGGC‑GCATGGGCAGGTTACCGACg > 2:766377/1‑136 (MQ=255) ccGTCCTGGCGTTCGCTGGCGAATGCCGAATTGGTGTTGAGCAGCACTTTTGCGCCGTCTTCCAGTTGCAGGCGCTGGCGCTCGCCGCCCCCCGGAAGGTGGTCGGCCGGCAGGC‑GCATGGGCCGGTTACcggcgg > 1:878976/1‑136 (MQ=255) cTGGCGTTCGCTGGCGAATGCCGAATTGGTGTTGAGCAGCACTTTTGCGCCGTCTTCCAGTTGCAGGCGCTGGCGCTCGCCCCCCACCGGAAGGGGGGCGGCCTGCAGGC‑GCAGGGGCAGGTTACCCACCGGGaaa > 1:1276057/1‑135 (MQ=255) tGGCGAATGCCGAATTGGTGTTGAGCAGCACTTTTGCGCCGTCTTCCAGTTGCAGGCGCTGGCGCTCGCCGACCCCCGGAAGGTGGTCGGCCGGCAGGC‑GGATGGGGCGGTTTCCGACGGGGAATAGCCCGACcac > 2:1279389/1‑135 (MQ=255) tGGCGAATGCCGAATTGGTGTTGAGCAGCACTTTTGCGCCGTCTTCCAGTTGCAGGCGCTGGCGCTCGCCGACCACCGTAAGGTGGTCGGCCTGCAGGC‑GCATGGGCAGGTTTCCGCCGGTGAATAGCCCGAcccc > 1:314593/1‑134 (MQ=255) tGGCGAATGCCGAATTGGTGTTGAGCAGCACTTTTGCGCCGTCTTCCAGTTGCAGGCGCTGGCGCTCGCCCACCCCCGGAATGTGGTGGGCCAGCACGCGGCGTGGGAGGTTTACCG‑CGGTGTAAATCCCGAcccc > 2:942805/1‑134 (MQ=255) gtgtGGTGCTGCACTTAGGCGCCGTCTTCATTTTGCTGGCGCGGGCGGTCGCCGACCACCGTACGGGGGTCGGCCTGCAGGC‑GCATGGGCAGGTTACCGACGGTGAATAGCCCGACCAGCAGCAGCGCTGCGGTgg < 1:543866/136‑1 (MQ=255) ttttGCGCCGTCTTCCAGTTGCAGGCGCTGGCGCTCGCCGCCCCCCCGAAGGTGGTGGGGCGGCAGGC‑GGAAGGGGCGGTTTGCGAAGGTGTATATCCCGACCCACAGCACCGCAGCGGGGGGCAGGGGGTTTCaa > 2:658990/1‑135 (MQ=255) ttttGCGCCGTCTTCCAGTTGCAGGCGCTGGCGCTCGCCGCCCCCCCGAAGGTGGTGGGCCGGCACGC‑GCCGGGGGAGGGTTACGCCGGGGGATATCCCCCCCACCCGCACCGCTGCGGTGGGCAGGGGGTTGCac > 2:235456/1‑135 (MQ=255) ttttGCGCCGTCTTCCAGTTGCAGGCGCTGGCGCTCGCCGCCCACCCGAAGGTGGTGGGCCGGGAGGC‑GCATGGGGCGGTTAACGACGGTGAATTTCCCGCCCCGCCGCCCCGCGGGCGTGGGCAGGGGGTTACAg > 2:656855/1‑136 (MQ=255) ttttGCGCCGTCTTCCAGTTGCAGGCGCTGGCGCTCGCCCCCCCCCGGAAGGGGGGAGGGCAGGACGC‑GCCTGGGGCGGTTTACGCCCGGGAAAAGCCCCACCAGCCGCCGCGCGGCGGGGGCCAGGGGgttgccc > 1:788463/1‑132 (MQ=255) cgcCGTCTTCCAGTTGCAGGCGCTGGCGCTCGCCGACCACCGTAAGGTGGTCGGCCTGCAGGC‑GCATGGGCAGGTTACCGACGGTGAATAGCCCGACCAGCCGCAGCGCTGCGGTGGCCAGGGGTTTCCAGTGACt > 1:477072/1‑136 (MQ=255) cggcgctggccccCGCCGACCACCGTACGGGGGGCGGCCTGCAGGC‑GCATGGGCAGGTTACCGACGGTGAATAGCCCGACCAGCAGCAGCGCTGCGGTGGCCAGGGGTTTCCAGTGACTGCGCAGGCGCCCGCGcc < 2:347969/135‑1 (MQ=255) ccGCCGACCCCGCTACGGGGGGCGGCCGGCAGGC‑GCATGGGCAGGTTACCGACGGTGAATAGCCCGACCAGCAGCAGCGCTGCGGTGGCCAGGGGGTTCCAGTGACTGCGCAGGCGCCCGCGCCATGACCTGCGtt < 2:1280377/135‑1 (MQ=255) gCCGACCACCGTAAGGTGGTCGGCCTGCAGGC‑GCATGGGCAGGTTACCGACGGTGAATAGCCCGACCAGCAGCAGCGCTGCGGTGGCCAGGGGTTTCCAGTGACTGCGCAGGCGCCCGCGCCATGACCTGCGTtgc < 2:536291/136‑1 (MQ=255) | AGTAAGCCTCGCCCTGTAGCAGGCGGGCGACCTGGCGGCCGTCCTGGCGTTCGCTGGCGAATGCCGAATTGGTGTTGAGCAGCACTTTTGCGCCGTCTTCCAGTTGCAGGCGCTGGCGCTCGCCGACCACCGTAAGGTGGTCGGCCTGCAGGC‑GCATGGGCAGGTTACCGACGGTGAATAGCCCGACCAGCAGCAGCGCTGCGGTGGCCAGGGGTTTCCAGTGACTGCGCAGGCGCCCGCGCCATGACCTGCGTTGC > NC_002947/1148668‑1148924 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |