| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 5,895,281 | A→G | intergenic (‑34/+177) | PP_5167 ← / ← cysA | hypothetical protein/sulfate/thiosulfate ABC transporter ATP‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,895,281 | 0 | A | G | 98.4% | 228.4 / NA | 62 | intergenic (‑34/+177) | PP_5167/cysA | hypothetical protein/sulfate/thiosulfate ABC transporter ATP‑binding protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (30/31); minor base T (0/1); total (30/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTGTTGGGCAGGGTGCGCTGCCAGTGACTCTGCCAATGGTTGTCTGGCGATCCTTGCCAACCCGGCACAATCAGGTAGCGAATCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGACAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATAAGAAGATATTTATTAATACCCATATTGCATAACAAGCAGGCTACAGCCACTCGCTTGAGAAAGGCTGTAAAGCTGCCCTGTCACGCGTTCAGGCAA > NC_002947/5895150‑5895413 | cTGTTGGGCAGGGTGCGCTGCCAGTGACTCTGCCAATGGTTGTCTGGCGATCCTTGCCAACCCGGCACAATCAGGTAGCGAATCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAg > 1:544965/1‑136 (MQ=255)cTGTTGGGCAGGGTGCGCTGCCAGTGACTCTGCCAATGGTTGTCTGGCGATCCTTGCCAACCCGGCACAATCAGGTAGCGAATCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTCGAGGCAAg > 1:316911/1‑136 (MQ=255) tGGGCAGGGTGCGCTGCCAGTGACTCTGCCAATGGTTGTCTGGCGATCCTTGCCAACCCGGCACAATCAGGTAGCGAATCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGtata < 2:1163759/136‑1 (MQ=255) gggCAGGGTGCGCTGCCAGTGACTCTGCCAATGGTTGTCTGGCGATCCTTGCCAACCCGGCACAATCAGGTAGCGAATCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATag > 2:249611/1‑136 (MQ=255) gggCAGGGTGCGCTGCCAGTGACTCTGCCAATGGTTGTCTGGCGATCCTTGCCAACCCGGCACAATCAGGTAGCGAATCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATag > 2:1267408/1‑136 (MQ=255) ggCAGGGTGCGCTGCCAGTGACTCTGCCAATGGTTGTCTGGCGATCCTTGCCAACCCGGCACAATCAGGTAGCGAATCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATagg > 2:471611/1‑136 (MQ=255) ggCAGGGTGCGCTGCCAGTGACTCTGCCAATGGTTGTCTGGCGATCCTTGCCAACCCGGCACAATCAGGTAGCGAATCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATagg > 1:933848/1‑136 (MQ=255) cAGGGTGCGCTGCCAGTGACTCTGCCAATGGTTGTCTGGCGATCCTTGCCAACCCGGCACAATCAGGTAGCGAATCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATaggga < 2:160556/136‑1 (MQ=255) gcgcTGCCAGTGACTCTGCCAATGGTTGTCTGGCGATCCTTGCCAACCCGGCACAATCAGGTAGCGAATCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGa > 2:966405/1‑136 (MQ=255) gcTGCCAGTGACTCTGCCAATGGTTGTCTGGCGATCCTTGCCAACCCGGCACAATCAGGTAGCGAATCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGaaa > 1:939400/1‑136 (MQ=255) gcTGCCAGTGACTCTGCCAATGGTTGTCTGGCGATCCTTGCCAACCCGGCACAATCAGGTAGCGAATCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGaaa > 1:348829/1‑136 (MQ=255) gcTGCCAGTGACTCTGCCAATGGTTGTCTGGCGATCCTTGCCAACCCGGCACAATCAGGTAGCGAATCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGaaa > 1:383121/1‑136 (MQ=255) cAGTGACTCTGCCAATGGTTGTCTGGCGATCCTTGCCAACCCGGCACAATCAGGTAGCGAATCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTc < 1:966405/136‑1 (MQ=255) cAGTGACTCTGCCAATGGTTGTCTGGCGATCCTTGCCAACCCGGCACAATCAGGTAGCGAATCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTc < 2:618061/136‑1 (MQ=255) aCTCTGCCAATGGTTGTCTGGCGATCCTTGCCAACCCGGCACAATCAGGTAGCGAATCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTaaa > 2:652016/1‑136 (MQ=255) gCCAATGGTTGTCTGGCGATCCTTGCCAACCCGGCACAATCAGGTAGCGAATCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAAt < 1:249611/136‑1 (MQ=255) gCCAATGGTTGTCTGGCGATCCTTGCCAACCCGGCACAATCAGGTAGCGAATCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAAt < 1:1267408/136‑1 (MQ=255) ccAATGGTTGTCTGGCGATCCTTGCCAACCCGGCACAATCAGGTAGCGAATCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATa < 2:834963/136‑1 (MQ=255) cAATGGTTGTCTGGCGATCCTTGCCAACCCGGCACAATCAGGTAGCGAATCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATaa > 2:459901/1‑136 (MQ=255) cAATGGTTGTCTGGCGATCCTTGCCAACCCGGCACAATCAGGTAGCGAATCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATaa > 1:863378/1‑136 (MQ=255) cAATGGTTGTCTGGCGATCCTTGCCAACCCGGCACAATCAGGTAGCGAATCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATaa > 1:1199691/1‑136 (MQ=255) cAATGGTTGTCTGGCGATCCTTGCCAACCCGGCACAATCAGGTAGCGAATCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATaa > 2:1340564/1‑136 (MQ=255) aaaTGGTTGTCTGGCGATCCTTGCCAACCCGGCACAATCAGGTAGCGAATCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATaa < 1:1204622/135‑1 (MQ=255) gTTGTCTGGCGATCCTTGCCAACCCGGCACAATCAGGTAGCGAATCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATAagaaga < 2:1096765/136‑1 (MQ=255) ttGTCTGGCGATCCTTGCCAACCCGGCACAATCAGGTAGCGAATCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATAAGAAGat < 2:495142/136‑1 (MQ=255) ttGTCTGGCGATCCTTGCCAACCCGGCACAATCAGGTAGCGAATCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATAAGAAGat < 1:471611/136‑1 (MQ=255) cTGGCGATCCTTGCCAACCCGGCACAATCAGGTAGCGAATCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATAAGAAGAtattt > 1:460568/1‑136 (MQ=255) cTGGCGATCCTTGCCAACCCGGCACAATCAGGTAGCGAATCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATAAGAAGAtattt < 2:497461/136‑1 (MQ=255) cTGGCGATCCTTGCCAACCCGGCACAATCAGGTAGCGAATCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATAAGAAGAtattt > 2:4610/1‑136 (MQ=255) ggCGATCCTTGCCAACCCGGCACAATCAGGTAGCGAATCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATAAGAAGAtatttat > 1:1301831/1‑136 (MQ=255) ggCGATCCTTGCCAACCCGGCACAATCAGGTAGCGAATCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATAAGAAGAtatttat < 2:1301831/136‑1 (MQ=255) ggCGATCCTTGCCAACCCGGCACAATCAGGTAGCGAATCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATAAGAAGAtatttat < 1:314518/136‑1 (MQ=255) ggCGATCCTTGCCAACCCGGCACAATCAGGTAGCGAATCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATAAGAAGAtatttat > 1:1195916/1‑136 (MQ=255) tCCTTGCCAACCCGGCACAATCAGGTAGCGAATCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATAAGAAGATATTTATTAATa > 2:12887/1‑136 (MQ=255) ggCACAATCAGGTAGCGAATCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATAAGAAGATATTTATTAATACCCATATTGCATa > 2:87962/1‑136 (MQ=255) cacaATCAGGTAGCGAATCGACTGATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATAAGAAGATATTTATTAATACCCATATTGCATAAc < 2:784192/136‑1 (MQ=255) cacaATCAGGTAGCGAATCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATAAGAAGATATTTATTAATACCCATATTGCATAAc < 2:1199691/136‑1 (MQ=255) cacaATCAGGTAGCGAATCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATAAGAAGATATTTATTAATACCCATATTGCATAAc < 2:1195916/136‑1 (MQ=255) cacaATCAGGTAGCGAATCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATAAGAAGATATTTATTAATACCCATATTGCATAAc < 1:128096/136‑1 (MQ=255) cacaATCAGGTAGCGAATCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATAAGAAGATATTTATTAATACCCATATTGCATAAc < 2:1123587/136‑1 (MQ=255) cacaATCAGGTAGCGAATCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATAAGAAGATATTTATTAATACCCATATTGCATAAc < 2:750134/136‑1 (MQ=255) aTCAGGTAGCGAATCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATAAGAAGATATTTATTAATACCCATATTGCATAACAAGc < 2:1303206/136‑1 (MQ=255) ggTAGCGAATCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATAAGAAGATATTTATTAATACCCATATTGCATAACAAGCAGGc > 1:854328/1‑136 (MQ=255) cGAATCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATAAGAAGATATTTATTAATACCCATATTGCATAACAAGCAGGCTACAg < 2:321715/136‑1 (MQ=255) aTCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATAAGAAGATATTTATTAATACCCATATTGCATAACAAGCAGGCTACAGCCa > 1:1309510/1‑136 (MQ=255) aTCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATAAGAAGATATTTATTAATACCCATATTGCATAACAAGCAGGCTACAGCCa > 1:965178/1‑136 (MQ=255) cGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATAAGAAGATATTTATTAATACCCATATTGCATAACAAGCAGGCTACAGCCACt > 1:499/1‑136 (MQ=255) tGCGCATGGGGACGCCTCCAGTAAGTTTGCGTTCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAATGGAATAAGTAGATATTTATTAATACCCATATTTCATAACAAGCAGGCTACAGGCACTCGCTTgag < 1:592899/136‑1 (MQ=255) tGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATAAGAAGATATTTATTAATACCCATATTGCATAACAAGCAGGCTACAGCCACTCGCTTgag < 1:134243/136‑1 (MQ=255) aTGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATAAGAAGATATTTATTAATACCCATATTGCATAACAAGCAGGCTACAGCCACTCGCTTGAGAAAgg < 2:935622/136‑1 (MQ=255) gACGCCTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATAAGAAGATATTTATTAATACCCATATTGCATAACAAGCAGGCTACAGCCACTCGCTTGAGAAAGGCTGTa < 2:1235523/136‑1 (MQ=255) cTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATAAGAAGATATTTATTAATACCCATATTGCATAACAAGCAGGCTACAGCCACTCGCTTGAGAAAGGCTGTAAAGCt > 2:23067/1‑136 (MQ=255) cTCCAGTAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATAAGAAGATATTTATTAATACCCATATTGCATAACAAGCAGGCTACAGCCACTCGCTTGAGAAAGGCTGTAAAGCt < 2:933848/136‑1 (MQ=255) cAGTAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATAAGAAGATATTTATTAATACCCATATTGCATAACAAGCAGGCTACAGCCACTCGCTTGAGAAAGGCTGTAAAGCTGcc > 1:358534/1‑136 (MQ=255) tAAGTTTGCGTGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATAAGAAGATATTTATTAATACCCATATTGCATAACAAGCAGGCTACAGCCACTCGCTTGAGAAAGGCTGTAAAGCTGCCCTg < 2:854328/136‑1 (MQ=255) ttGCGTGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATAAGAAGATATTTATTAATACCCATATTGCATAACAAGCAGGCTACAGCCACTCGCTTGAGAAAGGCTGTAAAGCTGCCCTGTCAcg < 2:257691/136‑1 (MQ=255) tGCTTGGAGTCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATAAGAAGATATTTATTAATACCCATATTGCATAACAAGCAGGCTACAGCCACTCGCTTGAGAAAGGCTGTAAAGCTGCCCTGTCACGCGTTc < 2:624943/136‑1 (MQ=255) tGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATAAGAAGATATTTATTAATACCCATATTGCATAACAAGCAGGCTACAGCCACTCGCTTGAGAAAGGCTGTAAAGCTGCCCTGTCACGCGTTc > 1:483489/1‑136 (MQ=255) tGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATAAGAAGATATTTATTAATACCCATATTGCATAACAAGCAGGCTACAGCCACTCGCTTGAGAAAGGCTGTAAAGCTGCCCTGTCACGCGTTc < 2:68744/136‑1 (MQ=255) tGCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATAAGAAGATATTTATTAATACCCATATTGCATAACAAGCAGGCTACAGCCACTCGCTTGAGAAAGGCTGTAAAGCTGCCCTGTCACGCGTTc < 2:865912/136‑1 (MQ=255) gCTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATAAGAAGATATTTATTAATACCCATATTGCATAACAAGCAGGCTACAGCCACTCGCTTGAGAAAGGCTGTAAAGCTGCCCTGTCACGCGTTCa > 1:108164/1‑136 (MQ=255) cTTGGAGGCAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATAAGAAGATATTTATTAATACCCATATTGCATAACAAGCAGGCTACAGCCACTCGCTTGAGAAAGGCTGTAAAGCTGCCCTGTCACGCGTTCAg > 1:51288/1‑136 (MQ=255) gaggCAAGTATAGGGAGGGCGAAATATTCCTAAAGGAATAAGAAGTTATTTATTAATACCCATATTGCATAACTAGCAGGCTACAGCCACTCGCTTGAGAAAGGCTGTAAAGCTGCCCTGTCACGCGTTCAGGCaa < 1:1329896/136‑1 (MQ=255) | CTGTTGGGCAGGGTGCGCTGCCAGTGACTCTGCCAATGGTTGTCTGGCGATCCTTGCCAACCCGGCACAATCAGGTAGCGAATCGACTCATTGCGCATGGGGACGCCTCCAGTAAGTTTGCGTGCTTGGAGACAAGTATAGGGAGGGCGAAATATTCGTAAAGGAATAAGAAGATATTTATTAATACCCATATTGCATAACAAGCAGGCTACAGCCACTCGCTTGAGAAAGGCTGTAAAGCTGCCCTGTCACGCGTTCAGGCAA > NC_002947/5895150‑5895413 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |