| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,869,711:1 | +C | 8.1% | intergenic (‑28/+24) | thyA ← / ← lgt | thymidylate synthase/prolipoprotein diacylglyceryl transferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,869,711 | 1 | . | C | 8.1% | 662.1 / 52.3 | 160 | intergenic (‑28/+24) | thyA/lgt | thymidylate synthase/prolipoprotein diacylglyceryl transferase |
| Reads supporting (aligned to +/- strand): ref base . (67/80); new base C (5/8); total (72/88) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.74e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
Only 100 of 167 total aligned reads displayed.
CCTTCTGCAGGTCGAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGTAACCGAGTT > NC_002947/5869563‑5869859 | ccTTCTGCAGGTCGAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAATCGGCAgggg‑g > 2:3720638/1‑150 (MQ=255)ccTTCTGCAGGTCGAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAgggg‑g > 2:1073299/1‑150 (MQ=255) cTTCTGCAGGTCGAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑Ga > 2:3914893/1‑150 (MQ=255) cTTCTGCAGGTCGAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑Ga > 2:3510805/1‑150 (MQ=255) cTGCAGGTCGAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAATACGGCAGGGG‑GATCg > 2:4976461/1‑150 (MQ=255) tGCAGGTCGAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGc > 2:398953/1‑150 (MQ=255) aGGTCGAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGC‑AAAACGGCAGGGGCGATCcccct < 1:4247507/150‑2 (MQ=255) aGGTCGAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCAGGGCTTACCTGTAGCAAAAACGGCAGGGGCGATCcccc < 2:1426229/150‑1 (MQ=255) tCGAAACGCAGCATCGCGCCCGGCTGGCTGATGGGGCGGATGCCGGTGCGTTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCTCCTGc < 2:1453755/150‑1 (MQ=255) tCGAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGGCGATC‑CCCCTGc > 1:3062654/1‑150 (MQ=255) tCGAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGAGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGc > 2:3100379/1‑150 (MQ=255) cGAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGGTTCATGGCTTACCTGTAGCAAAAACGGCAGGGGCGATC‑CCCCTGcc < 2:4675477/150‑1 (MQ=255) aaaCGCCGCATCGCGCCGGGCAGGGTGTTGGTGCGTATGCCGGTGCGGTTTCCCTGCACCTTGCCGTTATAAATGACTGCGCGGACCTGGTCCAGATACTTTTTCTGGGCTTACCTTTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGt < 1:2053730/150‑1 (MQ=255) aaaCGCAGCCTCGCGCCGGGCAGGCTGTTGGTGCGGATGCGGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGt < 1:2053538/150‑1 (MQ=255) aaaCGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGt < 2:3279573/150‑1 (MQ=255) aaaCGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGt > 2:3591020/1‑150 (MQ=255) aaCGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTg < 2:869310/150‑1 (MQ=255) aCGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGTTTTCCCTGAAACGTGCCTTTATCAATGACGTCGCGGACCAGTTCAATATACTGTTTCATGGCTTACCTTTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTgg < 2:2266514/150‑1 (MQ=255) aCGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTgg < 2:4063942/150‑1 (MQ=255) aCGCAGCACCGCGCCCGGCAGGCTGATGGTGCGGATGCGGGTGCGGTTTCCCTGCACCGTGCGGTTACCAATGACGTCGCGCACCTGGTCCCGAGCCTGTTTCTTGGCTTACCTGTAGCAAACACGGCAGGGG‑GATCGCCCCTGCCGTgg < 1:1531252/150‑1 (MQ=255) gccgccgcgcgCCCGGCCGGCGGTGGGTGCGGAGGCGGGTGCGGTTCCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCCGGCCCAGATACTGTTTCCTGGCTTACCGGTCGCAAACACGGCAGGGG‑GATCGCCCCTGCCGTGGGa < 1:543579/143‑1 (MQ=255) gcagcaTCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGa < 1:5449364/150‑1 (MQ=255) gcagcaCCGCCCCGGGCTGGCTGTTGGTGGGGTTGCGGGTGGTGTTTCCCTGCACCGTGCCTTTATAAATGAGGGCGCGGACCCGGTCCAGATACTGTTTCAGGGCTAACCTGTCGCAAACACGGCAGGGG‑GATCGCCCCTGCCGTGGGa < 1:1416487/150‑1 (MQ=255) gcaccaTCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTCCCCTGCAACGCGCGGTTATCAATGACGTCGCGGACCTGGACCAGATACTGTTTCATGGCTTACCTGTAGCAAACACGGCAGGGG‑GATCGCCCCTGCCGTGGGa < 1:970193/150‑1 (MQ=255) cagcaTCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGGCGATC‑CCCCTGCCGtttttg < 1:2248524/150‑6 (MQ=255) gcaTCGCGCCCGGCAGGCTGATGGTGCGGATGCGGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCCGGTCCATATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTa < 2:2472823/150‑1 (MQ=255) tCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATc > 1:2475309/1‑150 (MQ=255) tCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATc > 2:1150781/1‑150 (MQ=255) tCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAAGGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATc > 2:1151107/1‑150 (MQ=255) gcCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCTTGGCTTACCTGTAGAAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGc < 2:2524893/150‑1 (MQ=255) gcCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGc < 2:5250881/150‑1 (MQ=255) ggCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGt > 1:790108/1‑150 (MQ=255) gCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGtt > 1:2497062/1‑150 (MQ=255) gCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGc > 2:5318027/1‑150 (MQ=255) gATGGTGCGTATGCCGGGGCGGTTGCCCTGCAACGTGCCTTTATCAATGACGTGGCGGACCTGGTCCAGATACTGTTTCTTGGCTTACCTTTAGAAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGt < 1:571456/150‑1 (MQ=255) ggTGCGGATGCGGGTGCGGTTTCCCTGCAACGTGCCTTTATCATTGACGTCGCGGACCTGGTCCAGATACTGTTTCTGGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAgg < 1:4287789/150‑1 (MQ=255) gTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGTCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGc > 1:63442/1‑150 (MQ=255) tGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCt > 2:3378281/1‑150 (MQ=255) tGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCt > 2:1904047/1‑150 (MQ=255) ggATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCCGGTCCAGATACTGTTTCATGGCTTACCTGTATCAAAAACGGCAGGGG‑GGAGGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGc < 1:3510805/150‑1 (MQ=255) gATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCg > 2:5386699/1‑150 (MQ=255) cGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATtat > 2:1800351/1‑150 (MQ=255) cGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACGGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATGAATCAGGCGGGTTTCGCCGTAGGCTTGCGATtat < 2:762080/150‑1 (MQ=255) gTGCGGTTTCCCTGCAACGTGCCTTTATAAATGACTTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACATGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATaa < 1:3805971/150‑1 (MQ=255) gTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCTTGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATaa < 2:595157/150‑1 (MQ=255) gTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATaa < 1:1338947/150‑1 (MQ=255) gTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCAGGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATaa < 2:279800/150‑1 (MQ=255) gTGCGGTTGCCCTGCAACGTGCCGTTATCACTGCCGTCGCGGACCAGGGCCAGATCGTGTTTCAGGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATaa < 1:2585835/150‑1 (MQ=255) gTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCcca > 1:3299901/1‑150 (MQ=255) gCAACGTCCCGTTATCAATGACGTCGCGGACCAGCTCCAGATACTGTTTCTTGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCa < 2:169497/150‑1 (MQ=255) cAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCAAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCaa < 1:2320952/150‑1 (MQ=255) tGCGGTTATCAATGCCGTCGGGGACCCGGTCCTGCTCCGGTTTCCGGGCTTACGTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGa < 1:1073299/150‑1 (MQ=255) tGCCGTTATCATTGACGTCGCGTACCTGGTCCAGATACTTTTTCTGGGCTTACCTTTAGAAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGa < 1:215706/150‑1 (MQ=255) tGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCTTGGCTTACCTGTAGAAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGa < 2:517130/150‑1 (MQ=255) gCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAg < 2:3466047/150‑1 (MQ=255) cctttATAAATGACGTCGCGGACCCGGTCCTGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAgg < 1:2395970/147‑1 (MQ=255) cAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTGGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGa > 1:2324436/1‑150 (MQ=255) aTGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGcc > 2:2250298/1‑76 (MQ=255) gACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTat > 2:3570412/1‑150 (MQ=255) gTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTatcat > 1:593475/1‑150 (MQ=255) gTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTatcat > 1:3348246/1‑150 (MQ=255) tCGCGGACCAGTTCAATATACTTTTTAATGGCTTACCTGTAGAAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTatcatc < 1:3077787/150‑1 (MQ=255) tCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTatcatc > 1:1551540/1‑150 (MQ=255) tCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTatcatc < 1:2136176/150‑1 (MQ=255) tCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTatcatc > 1:909308/1‑150 (MQ=255) cgcgGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCg > 1:3141219/1‑150 (MQ=255) gACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAACACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAAt < 1:3756659/150‑1 (MQ=255) cAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGca < 1:1163006/150‑1 (MQ=255) gTCCAGATACTGTTTCTTGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAg < 2:4152156/150‑1 (MQ=255) tCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGc < 2:2993445/150‑1 (MQ=255) cAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCaa < 1:2887367/150‑1 (MQ=255) aGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAAc > 1:3481165/1‑150 (MQ=255) gATACTGTTTCATGGCTTACCTGTAGCAAAATCGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACt > 2:2405658/1‑150 (MQ=255) tACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTgg < 1:398953/150‑1 (MQ=255) aCTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGc < 1:399277/150‑1 (MQ=255) aCTGTTTCATGGATTACGTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGc < 1:5018127/150‑1 (MQ=255) gTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCtt < 1:3958784/150‑1 (MQ=255) tttCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTtg < 1:1668149/150‑1 (MQ=255) tttCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTtg > 1:370170/1‑150 (MQ=255) tttCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTtg > 2:18111/1‑150 (MQ=255) ttCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTtga < 1:4516747/150‑1 (MQ=255) ttCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTtga < 1:1788813/150‑1 (MQ=255) ttCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTtga < 2:4278099/150‑1 (MQ=255) ggCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTtgagtgag > 1:1886739/1‑150 (MQ=255) ccTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGc > 2:4925305/1‑81 (MQ=255) ccTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGc < 1:4925305/81‑1 (MQ=255) ccTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGagccagcc < 1:2637108/150‑1 (MQ=255) gTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGaa > 2:1754743/1‑150 (MQ=255) tAGCAAACACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAAc < 1:1040298/150‑1 (MQ=255) acacaCGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGa < 1:5268905/146‑1 (MQ=255) caCGGCAGGGGCGATC‑CCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAAcgc > 2:5265558/2‑145 (MQ=255) aCGGCAGGGGCGATC‑CCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGTa > 2:3400831/1‑150 (MQ=255) cGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGTaa < 1:1800351/150‑1 (MQ=255) ggCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGTAAc > 1:4136439/1‑150 (MQ=255) aGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGTGGCCACCGACTATCATTGGAATGCACAGCAACTGGCATTGAGTGAGCCAGCCGAACGCGATGTAACCGa > 1:1340658/1‑150 (MQ=255) gggg‑gATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGTAACCGAg < 1:2479260/150‑1 (MQ=255) ggg‑gATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGTAACCGAGt > 1:3190318/1‑150 (MQ=255) gg‑gATCGCCCCTGCCGTGGGATTAATCAGGCGGTTTTCGCCGTAGGATTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGTAACCGAGtt < 2:3849369/150‑1 (MQ=255) gg‑gATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCaa < 2:263228/109‑1 (MQ=255) gg‑gATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCaa > 1:263228/1‑109 (MQ=255) | CCTTCTGCAGGTCGAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGTAACCGAGTT > NC_002947/5869563‑5869859 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |