| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 497,720:1 | +G | 5.4% | coding (1589/2388 nt) | PP_0409 → | two‑component system sensor histidine kinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 497,720 | 1 | . | G | 5.4% | 750.5 / 32.9 | 168 | coding (1589/2388 nt) | PP_0409 | two‑component system sensor histidine kinase |
| Reads supporting (aligned to +/- strand): ref base . (84/75); new base G (4/5); total (88/80) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.38e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.58e-01 | |||||||||||
Only 100 of 172 total aligned reads displayed.
TATCAGTGAGGGTAGCGAGGCTTTGGTGGGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAGCTGGCGCTGGCGA > NC_002947/497571‑497869 | tCAGTGAGGGTAGCGAGGCTTTGGTGGGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑Ct < 1:4497020/150‑1 (MQ=255) cAGTGAGGGTAGCGAGGCTTTGGTGGGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTg < 1:4972570/150‑1 (MQ=255) cAGTGAGGGTAGCGAGGCTTTGGTGGGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAG‑GACCAGTCCTGGTcgctg < 1:2671881/150‑5 (MQ=255) aGTGAGGGTAGCGAGGCTTTGGTGGGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTgg > 1:231330/1‑150 (MQ=255) gTGAGGGTAGCGAGGCTTTGGTGGGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGc > 2:13844/1‑150 (MQ=255) aGGGTAGCGAGGCTTTGGTGGGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAgg < 1:1372546/150‑1 (MQ=255) gggTAGCGAGGCTTTGGTGGGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACGGGGTGCAGGACCTGGCCCTGGCCAG‑GACCAGTCCTGGTCGCTGGccagg < 1:1063923/150‑5 (MQ=255) gggTAGCGAGGCTGGGGTGGGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAggg < 2:2741580/150‑1 (MQ=255) ggTAGCGAGGCTTTGGTGGGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAgggg > 2:1987793/1‑150 (MQ=255) gTAGCGAGGCTTTGGTGGGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGgc < 1:3559693/150‑1 (MQ=255) gCGAGGCTTTGGTGGGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCa > 1:707696/1‑150 (MQ=255) gCGAGGCTTTGGTGGGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCCTGCCAG‑GACCAGTCCTGGTCGCTGGCCAGGgccag < 2:570068/150‑4 (MQ=37) cGAGGCTTTGGTGGGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCAt > 1:1864290/1‑150 (MQ=255) cGAGGCTTTGGTGGGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCCTGCCAG‑GACCAGTCCTGGTCGCTGGCCAGGgccagg < 2:1930808/150‑5 (MQ=37) cGAGGCTGTGGTGGGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCAt > 2:4614984/1‑150 (MQ=255) gAGGCTTTGGTGGGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATc > 2:2041702/1‑150 (MQ=255) gAGGCTTTGGTGGGTTATACACCCAGCGAGATCCAGCCCCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATc < 1:237512/150‑1 (MQ=255) aGGCTTTGGTGGGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGgccaggtc < 1:4609843/150‑7 (MQ=255) aGGCTTTGGTGGGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATcc < 2:271815/150‑1 (MQ=255) ttGGTGGGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCAcc < 2:5338989/150‑1 (MQ=255) ttGGTGGGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCAcc < 1:527420/150‑1 (MQ=255) ttGGTGGGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCAcc < 1:527194/150‑1 (MQ=255) ggtggGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCg > 1:3374072/1‑150 (MQ=255) ggtggGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCg > 1:817066/1‑150 (MQ=255) tGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGa < 2:3516240/150‑1 (MQ=255) tGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGa > 1:187426/1‑150 (MQ=255) gCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACATGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGaa < 1:2616480/150‑1 (MQ=255) aCCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACa > 1:4308778/1‑150 (MQ=255) aCCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCCTGCCAG‑GACCAGTCCTGGTCGCTGGcc > 1:1540786/1‑119 (MQ=38) aCCAAGCGAGATCCAGAAACAGCAGATGTGACTCCGAAAACTTGTGCACCACTAGGACCGTGATGAATATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACAAGGACTCTTC‑CTGGCATGGCAGCATCCTCACACGGCAGGGAGAACa > 2:3263030/1‑150 (MQ=255) cccAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCACACCCGGCAGGGCGAACAg < 2:4979954/150‑1 (MQ=255) ccAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAgc > 2:4833793/1‑150 (MQ=255) ccAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAgc > 1:4732505/1‑150 (MQ=255) aGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGACCAgcgc > 2:3716335/1‑150 (MQ=255) gagaTCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTgg > 2:2535168/1‑150 (MQ=255) gagaTCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTgg > 2:2535265/1‑150 (MQ=255) aTCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGcc > 1:3200004/1‑150 (MQ=255) aTCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGcc > 1:1316654/1‑150 (MQ=255) aTCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGcc > 2:790033/1‑150 (MQ=255) ccAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGa < 1:2087672/150‑1 (MQ=255) ccAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGa < 2:4302844/150‑1 (MQ=255) ccAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGa < 1:2087661/150‑1 (MQ=255) ccAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGa > 2:4965220/1‑150 (MQ=255) gCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGatat > 1:454428/1‑150 (MQ=255) cccGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCaa < 2:4925910/150‑1 (MQ=255) cccGCACATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCaa > 2:162535/1‑150 (MQ=255) ccGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAg < 1:1469392/150‑1 (MQ=255) gCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGccc > 1:4137283/1‑150 (MQ=255) tGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGc > 2:4520667/1‑150 (MQ=255) tGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGc > 1:4225020/1‑150 (MQ=255) tGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGc > 2:4520654/1‑150 (MQ=255) tGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGc < 1:264777/150‑1 (MQ=255) gcAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATc > 1:689612/1‑150 (MQ=255) cAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCt > 2:1497698/1‑150 (MQ=255) cAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCt < 1:1436879/150‑1 (MQ=255) cTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGc > 1:4775055/1‑150 (MQ=255) cTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCACATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGc > 2:977964/1‑150 (MQ=255) tGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGc > 1:2982378/1‑149 (MQ=255) tGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCa > 2:1282294/1‑150 (MQ=255) tGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCa > 2:5096464/1‑150 (MQ=255) tGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCa > 2:5096479/1‑150 (MQ=255) ggTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCaa > 1:2489462/1‑150 (MQ=255) gCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACgg > 2:1498255/1‑150 (MQ=255) cccGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAg > 1:3395367/1‑150 (MQ=255) ccGAGGACCATGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAgg < 1:663133/150‑1 (MQ=255) cGAGGACCGTGCTGATTATCCCAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGt < 1:4074418/150‑1 (MQ=255) cGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGt > 1:108437/1‑150 (MQ=255) ggACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAgt < 2:108437/150‑1 (MQ=255) ccGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGtgtg < 2:817066/150‑1 (MQ=255) cGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTgg < 1:3411464/150‑1 (MQ=255) gTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTggg < 2:3073929/150‑1 (MQ=255) gTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTggg < 2:343747/150‑1 (MQ=255) tGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACgg > 1:3798615/1‑150 (MQ=255) tGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACgg > 2:4079826/1‑150 (MQ=255) gATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGgt < 1:304199/150‑1 (MQ=255) aTTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGgtg > 1:4421736/1‑150 (MQ=255) aTTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGgtg < 2:521261/150‑1 (MQ=255) tATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCCCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTa < 1:3572795/150‑1 (MQ=255) caGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTg > 1:890133/1‑150 (MQ=255) aGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTgg < 2:3163809/150‑1 (MQ=255) gggTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTggg < 2:297627/150‑1 (MQ=255) gggTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTggg < 1:2041702/150‑1 (MQ=255) tGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACa < 2:2860929/150‑1 (MQ=255) cAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATc > 2:935211/1‑150 (MQ=255) cAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATc < 2:5291264/150‑1 (MQ=255) tcctggccctggcCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATcacac > 2:2250387/2‑150 (MQ=255) aCCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTCGTCTGGGACATcacac > 2:3498389/1‑150 (MQ=255) aCCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATcac < 2:2711875/148‑1 (MQ=255) ggccctggccAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAggg > 1:2441584/1‑150 (MQ=255) ggccctggccAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAggg < 1:990730/150‑1 (MQ=255) gccctggccAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGc < 2:2142166/150‑1 (MQ=255) tgccaggACCAGTCCTGGTCGCTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCg > 2:4112478/7‑150 (MQ=255) aCCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAgc > 1:5138528/1‑150 (MQ=255) ccAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAgct < 1:2263275/150‑1 (MQ=255) cAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAgctg < 2:4308778/150‑1 (MQ=255) gTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGt > 1:2809811/1‑90 (MQ=255) gTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTCGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAgctggcgctggc > 2:2375570/1‑150 (MQ=255) gTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAgctggcgctggc > 2:4846757/1‑150 (MQ=255) gTC‑CGGGCAGGGGCGCAGCCTCCCCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACAGCACACAGGGCAAGCGGGCCGAgctggcgctggc < 2:187426/150‑1 (MQ=255) c‑cTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAGCTGGCGCTGGCGa < 2:1529203/150‑1 (MQ=255) | TATCAGTGAGGGTAGCGAGGCTTTGGTGGGTTATGCACCCAGCGAGATCCAGCACCCGCAGATGGGCCTGCGCAACCTGGTGCACCCCGAGGACCGTGCTGATTATCACAGGGTGCAGGACCTGGCCCTGGCCAGCGACCAGGACTGGTC‑CTGGCAGGGGCGCATCCTCACCCGGCAGGGCGAACAGCGCTGGGCCGATATCAAGGCCAGCGCCCGGCATCTGGGCAACGGCCAGGTAGTGTGGGACGGTGTAGTCTGGGACATCACACAGGGCAAGCGGGCCGAGCTGGCGCTGGCGA > NC_002947/497571‑497869 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |