| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 235320 = | 123 (0.750) | 21 (0.140) | 12/248 | NT | 14.5% | intergenic (+17/+108) | PP_0183/argH | glutathione S‑transferase/argininosuccinate lyase |
| ? | NC_002947 | 235401 = | 134 (0.880) | intergenic (+98/+27) | PP_0183/argH | glutathione S‑transferase/argininosuccinate lyase | |||||
GTGCGTGCTGCCGTCGTTCGTGGCAAGGCCCTGTTGGCGTCTCGCTAATCCCCCAAGGCGAGGGCTTCGCCCTCGTTCGCGGGCACGCCCGCTCCCACAGGTAATGCACAAGTTTCAAAAACGGTGCA‑GACCTGTGGGAGCGGGCATGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/235475‑235320‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcccgcgaaCGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCACGCGCATTCACCGAGCCTTCCAGCGTCAGCACGGCAAACAC > NC_002947/235401‑235547 GTGCGTGCTGCCGTCGTTCGTGGCAAGGCCCTGTTGGCGTCTCGCTAATCCCCCAAGGCGAGGGCTTCGCCCTCGTTCGCGGGCACGCCCGCTCCCACAGGTAATGCACAAGTTTCAAAAACGGTGCA‑GACCTGTGGGAGCGGGCATGCC > 2:365749/1‑150 CGTGCTGCCTTCTTTCTTGGCAAGGCCCTGTTGGCGTCTCGCTAATCCCCAAAGGCGTGTGCTTCGCCCTCTTTCGCGGGAACGCCCGCTCCCACAGTTAATGAAAAAGTTTCAAAAACGGTGCA‑GACCTGTGGTAGCGGGCATGCCCGC < 1:269225/150‑1 TGCTGCCGTCGTTCGTGGCAAGGCCCTGTTGGCGTCTCGCTAATCCCCCAAGGCGAGGGCTTCGCCCTCGTTCGCGGGCACGCCCGCTCCCACACGTAATGCACAAGTTTCAAAAACGGTGCA‑GACCAGTGGGAGCGGGCATGCCCGCGA > 1:3841203/1‑150 GCTGCCGTCGTTCGTGGCAAGGCCCTGTTGGCGTCTCGCTAATCCCCCAAGGCGAGGGCTTCGCCCTCGTTCGCGGGCACGCCCGCTCCCACAGGTAATGCACAAGTTTCAAAAACGGTGCA‑GACCTGTGGGAGCGGGCATGCCCGCtcc < 2:2719908/150‑4 TCCCACAGGTAATGCACAAGTTTCAAAAACGGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGC > 2:1452548/1‑150 TCCCACAGGTAATGCACAAGTTTCAAAAACGGTGCA‑GACCTGTGGGAGCGGGCATGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCG > 1:5152344/1‑150 TCCCACAGGTAATGCACAAGTTTCAAAAACGGTGCA‑GACCTGTGGGAGCGGGCATGCCCGCGAACGAGGGCGAAGCCCTCGCCGTGGGGGATTAGCGAGACGCCAACAGGGCCGTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCG > 1:5152360/1‑150 CACAGGTAATGCACAAGTTTCAAAAACGGTGCA‑GACCTGTGGGAGCGGGCATGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCG > 2:3372124/1‑150 CACAGGTAATGCACAAGTTTCAAAAACGGTGCA‑GACCTGTGGGAGCGGGCATGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCG > 2:1185050/1‑150 CACAGGTAATGCACAAGTTTCAAAAACGGTGCA‑GACCTGTGGGAGCGGGCATGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGC > 1:4234533/1‑109 CACAGGTAATGCACAAGTTTCAAAAACGGTGCA‑GACCTGTGGGAGCGGGCATGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGC < 2:4234533/109‑1 ACAGGTAATGCACAAGTTTCAAAAACGGTGCA‑GACCTGTGGGAGCGGGCATGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGAT < 1:3442145/88‑1 ACAGGTAATGCACAAGTTTCAAAAACGGTGCA‑GACCTGTGGGAGCGGGCATGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGAT > 2:3442145/1‑88 CAGGTAATGCACAAGTTTCAAAAACGGTGCA‑GACCTGTGGGAGCGGGCATGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTA < 1:3372124/150‑1 AGGTAATGCACAAGTTTCAAAAACGGTGCA‑GACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGTCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTAC > 1:3820136/1‑150 AGGTAATGCACAAGTTTCAAAAACGGTGCA‑GACCTGTGGGAGCGGGCATGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTAC > 1:16640/1‑150 GCACAAGTTTCAAAAACGGTGCA‑GACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAAT > 2:5305759/1‑150 GCACAAGTTTCAAAAACGGTGCA‑GACCTGTGGGAGCGGGCATGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAAT > 2:871471/1‑150 GCACAAGTTTCAAAAACGGTGCA‑GACCTGTGGGAGCGGGCATGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGACGGCGCCGTACCACCAAT > 2:2437811/1‑150 ACAAGTTTCAAAAACGGTGCA‑GACCGGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGT > 2:2737523/1‑150 AAGTTTCAAAAACGGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTTCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTG > 2:3637087/1‑150 AAGTTTCAAAAACGGTGCA‑GACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGAACCACCCAGGTGG > 2:933582/1‑150 AAGTTTCAAAAACGGTGCA‑GACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAA < 1:71389/57‑1 AAGTTTCAAAAACGGTGCA‑GACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAA > 2:71389/1‑57 AAAAACGGTGCA‑GACCTGTGGGAGCGGGCATGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCACGCG > 2:4509001/1‑150 TGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCACGCGCATTCACCGAGCCTTCCAGCGTCAGCACGG < 2:221840/150‑1 TGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCACGCGCATTCACCGAGCCTTCCAGCGTCAGCACGG < 2:921518/150‑1 CCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCACGCGCATTCACCGAGCCTTCCAGCGTCAGCACGGCA < 2:4800289/150‑1 CCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCACGCGCATTCACCGAGCCTTCCAGCGTCAGCACGGCAA > 2:3320483/1‑150 CCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCACGCGCATTCACCGAGCCTTCCAGCGTCAGCACGGCAA > 2:704333/1‑150 CCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCACGCGCATTCACCGAGCCTTCCAGCGTCAGCACGGCAA > 1:1481727/1‑150 CGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCACGCGCATTCACCGAGCCTTCCAGCGTCAGCACGGCAAA > 2:1843236/1‑150 CGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCACGCGCATTCACCGAGCCTTCCAGCGTCAGCACGGCAAA < 1:4219098/150‑1 GAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCACGCGCATTCACCGAGCCTTCCAGCGTCAGCACGGCAAACAC < 1:1459185/150‑1 GTGCGTGCTGCCGTCGTTCGTGGCAAGGCCCTGTTGGCGTCTCGCTAATCCCCCAAGGCGAGGGCTTCGCCCTCGTTCGCGGGCACGCCCGCTCCCACAGGTAATGCACAAGTTTCAAAAACGGTGCA‑GACCTGTGGGAGCGGGCATGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/235475‑235320‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcccgcgaaCGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAACGACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCACGCGCATTCACCGAGCCTTCCAGCGTCAGCACGGCAAACAC > NC_002947/235401‑235547 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |