| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 383390 | 101 (0.610) | 11 (0.070) | 9/242 | NT | 10.0% | intergenic (+47/‑136) | PP_0319/PP_0320 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| ? | NC_002947 | = 383406 | 106 (0.710) | intergenic (+63/‑120) | PP_0319/PP_0320 | hypothetical protein/methyl‑accepting chemotaxis transducer | |||||
TGTGCTCCAAGCAGGTTGAGCTGCAGAAGGAGCATCAGCAGACCCTTGCGCGAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/383231‑383390‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccgcgaatgcgGTGTTGAAGCCACTGACGCATTCGCGGGTGAACCCGCTCCTACGGGGGGACGGTGTACGGGGCTTATTGCTCAGCGATGGTCCGCACGATGGCATCCACCGTGGCGTCGATCTGCGCTTGAGTTCGCGCAAGGGTCTGCTGATGCTCCT < NC_002947/383406‑383258 TGTGCTCCAAGCAGGTTGAGCTGCAGAAGGAGCATCAGCAGACCCTTGCGCGAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACC > 1:4725950/1‑150TGTGCTCCAAGCAGGTTGAGCTGCAGAAGGAGCATCAGCAGACCCTTGCGCGAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACC > 1:2424298/1‑150 GCTCCAAGCAGGTTGAGCTGCAGAAGGAGCATCAGCAGACCCTTGCGCGAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGC > 1:1025653/1‑150 GCTCCAAGCAGGTTGAGCTGCAGAAGGAGCATCAGCAGACCCTTGCGCGAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGC > 1:3644051/1‑150 TCCAAGCAGGTTGAGCTGCAGAAGGAGCATCAGCAGACCCTTGCGCGAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGA > 2:2744042/1‑150 TCCAAGCAGGTTGAGCTGCAGAAGGAGCATCAGCAGACCCTTGCGCGAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGA > 2:4335175/1‑150 TCCAAGCAGGTTGAGCTGCAGAAGGAGCATCAGCAGACCCTTGCGCGAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTGAACCCGCtc < 2:1377668/150‑3 TCCAAGCAGGTTGAGCTGCAGAAGGAGCATCAGCAGACCCTTGCGCGAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTGAACCCGCtc < 2:1377621/150‑3 CAAGCAGGTTGAGCTGCAGAAGGAGCATCAGCAGACCCTTGCGCGAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAAT < 2:1581832/150‑1 AAGCAGGTTGAGCTGCAGAAGGAGCATCAGCAGACCCTTGCGCGAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATG > 2:3741339/1‑150 AAGCAGGTTGAGCTGCAGAAGGAGCATCAGCAGACCCTTGCGCGAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATG > 2:4860650/1‑150 AAGCAGGTTGAGCTGCAGAAGGAGCATCAGCAGACCCTTGCGCGAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATG > 2:4860689/1‑150 AGCAGGTTGAGCTGCAGAAGGAGCATCAGCAGACCCTTGCGCGAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGC < 2:3644051/150‑1 AGCAGGTTGAGCTGCAGAAGGAGCATCAGCAGACCCTTGCGCGAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGC < 1:2290851/150‑1 AGCAGGTTGAGCTGCAGAAGGAGCATCAGCAGACCCTTGCGCGAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGC > 2:1883659/1‑150 AGCAGGTTGAGCTGCAGAAGGAGCATCAGCAGACCCTTGCGCGAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGC < 2:1025653/150‑1 AGCAGGTTGAGCTGCAGAAGGAGCATCAGCAGACCCTTGCGCGAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGC < 1:146457/150‑1 AGCAGGTTGAGCTGCAGAAGGAGCATCAGCAGACCCTTGCGCGAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGC < 1:693697/150‑1 GTTGAGCTGCAGAAGGAGCATCAGCAGACCCTTGCGCGAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGGTGT < 1:3026170/150‑1 GCATCAGCAGACCCTTGCGCGAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTTACCCGCGAATGCGGTGTTGAAGCCACTGACGCAT < 2:510301/150‑1 ATCAGCAGACCCTTGCGCGAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTTACCCGCGAATGCGGTGTTGAAGCCACTGACGCATTC > 1:2693361/1‑150 CAGCAGACCCTTGCGCGAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCTGTAGGAGCGGGTTTACCCGCGAATGCGGTGTTGAAGCCACTGACGCATTCGC < 2:4645774/150‑1 AGCAGACCCTTGCGCGAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTTACCCGCGAATGCGGTGTTGAAGCCACTGACGCATTCGCG < 2:2693361/150‑1 GCAGACCCTTGCGCGAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTTACCCGCGAATGCGGTGTTGAAGCCACTGACGCATTCGCGG < 1:2633779/150‑1 ACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTTACCCGCGAATGCGGTGTTGAAGCCACTGACGCATTCGC < 2:2981200/132‑1 ACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTTACCCGCGAATGCGGTGTTGAAGCCACTGACGCATTCGC > 1:2981200/1‑132 TCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGGTGTTGAAGCCACTGACGCATTCGCGG < 1:5031657/132‑1 TCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGGTGTTGAAGCCACTGACGCATTCGCGG > 2:5031657/1‑132 AGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCTGTAGGAGCGGGTTTACCCG > 2:752472/1‑89 AGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCTGTAGGAGCGGGTTTACCCG < 1:752472/89‑1 ATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGGTGTTGAAGCCACTGACGCATTCGCGGGTGAA < 2:2188483/127‑1 ATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGGTGTTGAAGCCACTGACGCATTCGCGGGTGAA > 1:2188483/1‑127 CATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGGT > 2:2039096/1‑65 CATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCGGT < 1:2039096/65‑1 ACCCGCGAATGCGGTGTTGAAGCCACTGACGCATTCGCGGGTGAACCCGCTCCTACGGGGGGACGGTGTACGGGGCTTATTGCTCAGCGATGGTCCGCACGATGGCATCCACCGTGGCGTCGATCTGCGCTTGAGTTCGCGCAAGGGTCT < 2:1453092/150‑1 CCGCGAATGCGGTGTTGAAGCCACTGACGCATTCGCGGGTGAACCCGCTCCTACGGGGGGACGGTGTACGGGGCTTATTGCTCAGCGATGGTCCGCACGATGGCATCCACCGTGGCGTCGATCTGCGCTTGAGTTCGCGCAAGGGTCTGC > 1:3464607/1‑150 CCGCGAATGCGGTGTTGAAGCCACTGACGCATTCGCGGGTGAACCCGCTCCTACGGGGGGACGGTGTACGGGGCTTATTGCTCAGCGATGGTCCGCACGATGGCATCCACCGTGGCGTCGATCTGCGCTTGAGTTCGCGCAAGGGTCTGC > 1:1895425/1‑150 CCGCGAATGCGGTGTTGAAGCCACTGACGCATTCGCGGGTGAACCCGCTCCTACGGGGGGACGGTGTACGGGGCTTATTGCTCAGCGATGGTCCGCACGATGGCATCCACCGTGGCGTCGATCTGCGCTTGAGTTCGCGCAAGGGTCTGC > 2:655481/1‑150 CCGCGAATGCGGTGTTGAAGCCACTGACGCATTCGCGGGTGAACCCGCTCCTACGGGGGGACGGTGTACGGGGCTTATTGCTCAGCGATGGTCCGCACGATGGCATCCACCGTGGCGTCGATCTGCGCTTGAGTTCGCGCAAGGGTCTGC > 2:1327756/1‑150 CGCGAATGCGGTGTTGAAGCCACTGACGCATTCGCGGGTGAACCCGCTCCTACGGGGGGACGGTGTACGGGGCTTATTGCTCAGCGATGGTCCGCACGATGGCATCCACCGTGGCGTCGATCTGCGCTTGAGTTCGCGCAAGGGTCTGCT > 1:431694/1‑150 GCGAATGCGGTGTTGAAGCCACTGACGCATTCGCGGGTGAACCCGCTCCTACGGGGGGACGGTGTACGGGGCTTATTGCTCAGCGATGGTCCGCACGATGGCATCCACCGTGGCGTCGATCTGCGCTTGAGTTCGCGCAAGGGTCTGCTG > 1:6749/1‑150 CGAATGCGGTGTTGAAGCCACTGACGCGTTCGCGGGTGAACCCGCTCCTACGGGGGGACGGTGTACGGGGCTTATTGCTCAGCGATGGTCCGCACGATGGCATCCACCGTGGCGTCGATCTGCGCTTGAGTTCGCGCAAGGGTCTGCTGA < 2:2945267/150‑1 acTGCGGTTTTGACGCCACTGACGCATGCGCGGGTGACCCCGCTCCTACGGGGGGACGGTGTACGGGGCTTATTGCTCAGCGATGGTCCGCACGATGGCATCCACCGTGGCGTCGATCTGCGCTTGAGTTCGCGCAAGGGTCTGCTGATG < 1:157241/148‑1 GCGGTGTTTAAGCCACTGACGCATTCGCGGGTGAACCCGCTCCTACGGGGGGACGGTGTACGGGGCTTATTGCTCAGCGATGGTCCGCACGATGGCATCCACCGTGGCGTCGATCTGCGCTTGAGTTCGCGCAAGGGTCTGCTGATGCTC < 1:2083788/150‑1 GCGGTGTTGAAGCCACTGACGCATTCGCGGGTGAACCCGCTCCTACGGGGGGACGGTGTACGGGGCTTATTGCTCAGCGATGGTCCGCACGATGGCATCCACCGTGGCGTCGATCTGCGCTTGAGTTCGCGCAAGGGTCTGCTGATGCTC < 1:1396943/150‑1 CGGTGTTGAAGCCACTGACGCATTCGCGGGTGAACCCGCTCCTACGGGGGGACGGTGTACGGGGCTTATTGCTCAGCGATGGTCCGCACGATG < 2:408542/93‑1 CGGTGTTGAAGCCACTGACGCATTCGCGGGTGAACCCGCTCCTACGGGGGGACGGTGTACGGGGCTTATTGCTCAGCGATGGTCCGCACGATG > 1:408542/1‑93 GGTGTTGAAGCCACTGACGCATTCGCGGGTGAACCCGCTCCTACGGGGGGACGGTGTACGGGGCTTATTGCTCAGCGATGGTCCGCACGATGGCATCCACCGTGGCGTCGATCTGCGCTTGAGTTCGCGCAAGGGTCTGCTGATGCTCCT > 2:878649/1‑150 TGTGCTCCAAGCAGGTTGAGCTGCAGAAGGAGCATCAGCAGACCCTTGCGCGAACTCAAGCGCAGATCGACGCCACGGTGGATGCCATCGTGCGGACCATCGCTGAGCAATAAGCCCCGTACACCGTCCCCCCGTAGGAGCGGGTTCACCCGCGAATGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/383231‑383390‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccgcgaatgcgGTGTTGAAGCCACTGACGCATTCGCGGGTGAACCCGCTCCTACGGGGGGACGGTGTACGGGGCTTATTGCTCAGCGATGGTCCGCACGATGGCATCCACCGTGGCGTCGATCTGCGCTTGAGTTCGCGCAAGGGTCTGCTGATGCTCCT < NC_002947/383406‑383258 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |