New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 400311	135 (0.820)	7 (0.040)	6/264	NT	5.4%	intergenic (+43/‑107)	PP_0333/PP_0334	hypothetical protein/transposase
	?	NC_002947	= 400335	114 (0.700)					intergenic (+67/‑83)	PP_0333/PP_0334	hypothetical protein/transposase

GCAGCAACTTCAACTACCCGCTGCTGGTGGGTTCCAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/400162‑400311 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccACCGTGGCACTGTGATGCCTCGGCGGGGGCGAGTCCATCGATTACATTGTATGGCGCACGCTTCAGATCAGCACCCTGGCTTGCCAGCAGTGAACTTCTTCGCCGGGTTGACCGCCGCCTTGAACTCGCGCAGCGCCTTGGAACCCACC  <  NC_002947/400335‑400187                                                                                                                                                                                                                                                                                                             GCAGCAACTTCAACTACCCGCTGCTGGTGGGTTCCAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCC                                                                                                                                                       >  2:3790631/1‑150                         TGGTGGGTTCCAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATAAAAAGTAATAGATGGACTCGCCCCCACCGTGGCCCAGTGATGCCTCGGC                                                                                                                               >  2:5332493/1‑150                            TGGGTTCCAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCACCGTGGCACTGTGATGCCTCGGCGGG                                                                                                                            <  1:4118840/150‑1                              GGTTCCAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCACCGTGGCACTGTGATGCCTCGGCGGGGG                                                                                                                          <  2:5282788/150‑1                                         GCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTTATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCACCGTGGCACTGTGATGCCTCGGCGGGGGCGAGTCCATCG                                                                                                               <  2:905806/150‑1                                         GCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAAGAAGTTCACTGCTAGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCCACCGTGGCACTGTGATGCCTCGGCGGGGGCGAGTCCATCG                                                                                                               <  2:905617/150‑1                                                                                                                      GCGCCATACAATGTAATCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGGGGCGAGTCCATCGATTACATTGTATGGCGCACGCTTCAGATCAGCACCCTGGCTTGCCAGCAGTGAACTTCTTCGCCGGGTTGACCGCCG                                  >  1:5332493/1‑150                                                                                                                                      TCGATGGACTCGCCCCCGCCGAGGCATCACAGTGCCACGGTGGGGGCGAGTCCCTCGATTACATTGTATGGCGCACGCTTCAGATCAGCACCCTGGCTTGCCAGCAGTGAACTTCTTCGCCGGGTTGACCGCCGCCTTGAACTCGCGCAG                  >  1:2914604/1‑150                                                                                                                                                     CCACCGTGGCACTGTGATGCCTCGGCGGGGGCGAGTCCATCGATTACATTGTATGGCGCACGCTTCAGATCAGCACCCTGGCTTGCCAGCAGTGAACTTCTTCGCCGGGTTGACCGCCGCCTTGAACTCGCGCAGCGCCTTGGAACCCAC   <  1:1795558/150‑1                                                                                                                                                      CACCGTGGCACTGTGATGCCTCGGCGGGGGCGAGTCCATCGATTACCTTGTATGGCGCACGCTTCAGATCAGCACCCTGGCTTGCCAGCAGTGAACTTCTTCGCCGGGTTGACCGCCGCCTTGAACTCGCGCAGCGCCTTGGAACCC     >  2:2731133/1‑147                                                                                                                                                      CACCGTGGCACTGTGATGCCTCGGCGGGGGCGAGTCCATCGATTACATTGTATGGCGCACGCTTCAGATCAGCACCCTGGCTTGCCAGCAGTGAACTTCTTCGCCGGGTTGACCGCCGCCTTGAACTCGCGCAGCGCCTTGGAACCCACC  >  1:3882841/1‑150                                                                                                                                                      CACCGTGGCACTGTGATGCCTCGGCGGGGGCGAGTCCATCGATTACATTGTATGGCGCACGCTTCAGATCAGCACCCTGGCTTGCCAGCAGTGAACTTCTTCGCCGGGTTGACCGCCGCCTTGAACTCGCGCAGCGCCTTGGAACCCACC  >  1:3883101/1‑150                                                                                                                                                      CACCGTGGCACTGTGATGCCTCGGCGGGGGCGAGTCCATCGATTACATTGTATGGCGCACGCTTCAGATCAGCACCCTGGCTTGCCAGCAGTGAACTTCTTCGCCGGGTTGACCGCCGCCTTGAACTCGCGCAGCGCCTTGGAACCCACC  >  2:303505/1‑150                                                                                                                                                      CACCGTGGCACTGTGATGCCTCGGCGGGGGCGAGTCCATCGATTACATTGTATGGCGCACGCTTCAGATCAGCACCCTGGCTTGCCAGCAGTGAACTTCTTCGCCGGGTTGACCGCCGCCTTGAACTCGCGCAGCGCCTTGGAACCC     >  2:2011/1‑147                                                                                                                                                      CACCGTGGCACTGTGATGCCTCGGCGGGGGCGAGTCCATCGATTACATTGTATGGCGCACGCTTCAGATCAGCACCCTGGCTTGCCAGCAGTGAACTTCTTCGCCGGGTTGACCGCCGCCTTGAACTCGCGCAGCGCCTTGGAACCC     <  1:2731133/147‑1                                                                                                                                                      CACCGTGGCACTGTGATGCCTCGGCGGGGGCGAGTCCATCGATTACATTGTATGGCGCACGCTTCAGATCAGCACCCTGGCTTGCCAGCAGTGAACTTCTTCGCCGGGTTGACCGCCGCCTTGAACTCGCGCAGCGCCTTGGAACCC     <  1:2011/147‑1                                                                                                                                                      CACCGTGGCACTGTGATGCCTCGGCGGGGGCGAGTCCATCGATTACATTGTATGGCGCACGCTTCAGATCAGCACCCTGGCATGCCAGCAGTGAACATATTCGCCGGGTTGACCGCCGCCTAGAACACGCGCAGCGCCTAGGAACACACC  >  2:4558584/1‑150                                                                                                                                                      CACCGTGGCACTGTGATGCCTCGGCGGGGGCGAGTCCATCGATAACATTGTGTGGCGCACGCTTCAGATCAGCACCCTGGCTTGCCAGCAGTGAACTTCTTCGCCGGGTTGACCGCCGCCTTGAACTCGCGCAGCGCCTTGGAACCCACC  >  1:3708548/1‑150                                                                                                                                                                                                                                                                                                             GCAGCAACTTCAACTACCCGCTGCTGGTGGGTTCCAAGGCGCTGCGCGAGTTCAAGGCGGCGGTCAACCCGGCGAAGAAGTTCACTGCTGGCAAGCCAGGGTGCTGATCTGAAGCGTGCGCCATACAATGTAATCGATGGACTCGCCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/400162‑400311 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccACCGTGGCACTGTGATGCCTCGGCGGGGGCGAGTCCATCGATTACATTGTATGGCGCACGCTTCAGATCAGCACCCTGGCTTGCCAGCAGTGAACTTCTTCGCCGGGTTGACCGCCGCCTTGAACTCGCGCAGCGCCTTGGAACCCACC  <  NC_002947/400335‑400187

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.