| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 401690 | 122 (0.740) | 6 (0.050) +GTAAGCGTCCGGCGAACTCACCTTCCGAACTCCA |
5/200 | NT | 8.1% | intergenic (+214/+215) | PP_0334/PP_0335 | transposase/glutathione S‑transferase family protein |
| ? | NC_002947 | 6157179 = | 61 (0.370) | intergenic (‑11/+195) | PP_5398/PP_5399 | transposase/hypothetical protein | |||||
AGACCGTCGCAGACCGATGCCTCCGCTCCTACAGGCCTGATAGTGGCCTCAATGTAAACGGCACACTGCGAGCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/401544‑401690‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATCAGG > NC_002947/6157179‑6157327 |||||||||||||||||||||||||||||||||| AGACCGTCGCAGACCGATGCCTCCGCTCCTACAGGCCTGATAGTGGCCTCAATGTAAACGGCACACTGCGAGCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTA < 2:3165822/150‑1 GACCGTCGCAGACCGATGCCTCCGCTCCTACAGGCCTGATAGTGGCCTCAATGTAAACGGCACACTGCGAGCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAA < 2:4755005/150‑1 GACCGTCGCAGACCGATGCCTCCGCTCCTACAGGCCTGATAGTGGCCTCAATGTAAACGGCACACTGCGAGCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAA > 1:913334/1‑150 GCAGACCGATGCCTCCGCTCCTACAGGCCTGATAGTGGCCTCAATGTAAACGGCACACTGCGAGCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAAGCGTCCG > 2:4220652/1‑150 CAGACCGATGCCTCCGCTCCTACAGGCCTGATAGTGGCCTCAATGTAAACGGCACACTGCGAGCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAAGCGTCCGG > 1:2934026/1‑150 GACCGATGCCTCCGCTCCTACAGGCCTGATAGTGGCCTCAATGTAAACGGCACACTGCGAGCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAAGCGTCCGGCG < 2:913334/150‑1 CCGATGCCTCCGCTCCTACAGGCCTGATAGTGGCCTCAATGTAAACGGCACACTGCGAGCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAAGCGTCCGGCGAA < 1:1454970/150‑1 CCGATGCCTCCGCTCCTACAGGCCTGATAGTGGCCTCAATGTAAACGGCACACTGCGAGCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAAGCGTCCGGCGAA < 2:383659/150‑1 CCGATGCCTCCGCTCCTACAGGCCTGATAGTGGCCTCAATGTAAACGGCACACTGCGAGCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAAGCGTCCGGCGAA > 1:2430598/1‑150 CCGATGCCTCCGCTCCTACAGGCCTGATAGTGGCCTCAATGTAAACGGCACACTGCGAGCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAAGCGTCCGGCGAA < 1:1080179/150‑1 CCGATGCCTCCGCTCCTACAGGCCTGATAGTGGCCTCAATGTAAACGGCACACTGCGAGCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAAGCGTCCGGCGAA > 1:2885974/1‑150 CCGATGCCTCCGCTCCTACAGGCCTGATAGTGGCCTCAATGTAAACGGCACACTGCGAGCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAAGCGTCCGGCGAA < 1:4224243/150‑1 TGCCTCCGCTCCTACAGGCCTGATAGTGGCCTCAATGTAAACGGCACACTGCGAGCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAAGCGTCCGGCGAACTCA < 1:2309780/150‑1 CCTCCGCTCCTACAGGCCTGATAGTGGCCTCAATGTAAACGGCACACTGCGAGCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAAGCGTCCGGCGAACTCACC < 1:3335617/150‑1 CTCCGCTCCTACAGGCCTGATAGTGGCCTCAATGTAAACGGCACACTGCGAGCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAAGCGTCCGGCGAACTCACCT > 1:679449/1‑150 TCCGCTCCTACAGGCCTGATAGTGGCCTCAATGTAAACGGCACACTGCGAGCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAAGCGTCCGGCGAACTCACCTT > 2:580656/1‑150 TCCGCTCCTACAGGCCTGATAGTGGCCTCAATGTAAACGGCACACTGCGAGCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAAGCGTCCGGCGAACTCACCTT > 1:194973/1‑150 TCCGCTCCTACAGGCCTGATAGTGGCCTCAATGTAAACGGCACACTGCGAGCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAAGCGTCC > 1:1342828/1‑136 TCCGCTCCTACAGGCCTGATAGTGGCCTCAATGTAAACGGCACACTGCGAGCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAAGCGTCC < 2:1342828/136‑1 TCCGCTCCTACAGGCCTGATAGTGGCCTCAATGTAAACGGCACACTGCGAGCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAAGCGTCC < 2:1342944/136‑1 TCCGCTCCTACAGGCCTGATAGTGGCCTCAATGTAAACGGCACACTGCGAGCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAAGCGTCC > 1:1342944/1‑136 CTCCTACAGGCCTGATAGTGGCCTCAATGTAAACGGCACACTGCGAGCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAAGCGTCCGGCGAACTCACCTTCCGA < 1:169559/150‑1 TCCTACAGGCCTGATAGTGGCCTCAATGTAAACGGCACACTGCGAGCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAAGCGTCCGGCGAACTCACCTTCCGAA > 1:4848418/1‑150 TACAGGCCTGATAGTGGCCTCAATGTAAACGGCACACTGCGAGCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAAGCGTCCGGCGAACTCACCTTCCGAACTC < 1:3620348/150‑1 TACAGGCCTGATAGTGGCCTCAATGTAAACGGCACACTGCGAGCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAAGCGTCCGGCGAACTCACCTTCCGAACTC > 1:4437306/1‑150 TACAGGCCTGATAGTGGCCTCAATGTAAACGGCACACTGCGAGCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAAGCGTCCGGCGAACTCACCTTCCGAACTC > 2:3057579/1‑150 ACAGGCCTGATAGTGGCCTCAATGTAAACGGCACACTGCGAGCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAAGCGTCCGGCGAACTCACCTTCCGAACTCC < 2:3564129/150‑1 CAGGCCTGATAGTGGCCTCAATGTAAACGGCACACTGCGAGCTCACCACGATGTTGGCCAGAGGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCA < 2:5206621/150‑1 CAGGCCTGATAGTGGCCTCAATGTAAACGGCACACTGCGAGCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCA < 2:5206651/150‑1 AGGCCTGATAGTGGCCTCAATGTAAACGGCACACTGCGAGCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCACCCGGGTTCCTATGGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAG > 2:3762504/1‑150 GAGCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGTGTCCGCTTAAAAATACGCGGA < 1:3416603/150‑1 TCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGCGTCCGCTTAAAAATACGCGGACACC > 2:144146/1‑150 CCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGCGATGGCGTCCGCTTAAAAATACGCGGACACCATC < 1:144146/150‑1 ACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGC < 1:2460503/150‑1 CAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAAGCGTCCGGCGAACTCACCTTCAGAACTCCAGCATTAAGGGCGATGGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTG < 2:1462826/150‑1 TCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATGGTAAGCGTCCGGCGAACTCACCTTCCGAACTCCAGCATTAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGA < 2:1296437/150‑1 CAGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATCAG > 1:2326205/1‑150 AGCATTAAGGGCGATGGTGTCCGCGTATTTTTAAGCGGACGCGATCACCCTTATTGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATCAGG > 2:1516576/1‑150 |||||||||||||||||||||||||||||||||| AGACCGTCGCAGACCGATGCCTCCGCTCCTACAGGCCTGATAGTGGCCTCAATGTAAACGGCACACTGCGAGCTCACCACGATGTTGGCCAGAAGCAAAAAGCTTCCTCGAATAGGCCTGATACATAGATGCAACCGGGTTCCTATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/401544‑401690‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATCAGG > NC_002947/6157179‑6157327 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |