New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	851021 =	146 (0.890)	13 (0.080)	5/264	NT	9.8%	intergenic (‑601/‑204)	pcs/hemA	phosphatidylcholine synthase/glutamyl‑tRNA reductase
	?	NC_002947	= 2087482	96 (0.590)					intergenic (+226/‑369)	PP_1864/PP_1865	hypothetical protein/transposase

TTGGACAACCACCGTTCGCTATTGTGCTGATAGCGCAGCGGCTATCGCCTTTTCGTAGCCTGCCCTAGCGGTGTTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/851171‑851021 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTCCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCATCGCCTGAACTACCGCGCGCTTAGAAG  <  NC_002947/2087482‑2087335                                                                                                                                                                                                                                                                                                              TTGGACAACCACCGTTCGCTATTGTGCTGATAGCGCAGCGGCTATCGCCTTTTCGTAGCCTGCCCTAGCGGTGTTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAG                                                                                                                                                        <  2:4577104/150‑1  TGGACAACCACCGTTCGCTATTGTGCTGATAGCGCAGCGGCTATCGCCTTTTCGTAGCCTGCCCTAGCGGTGTTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGG                                                                                                                                                       <  2:2975210/150‑1  TGGACAACCACCGTTCGCTATTGTGCTGATAGCGCAGCGGCTATCGCCTTTTCGTAGCCTGCCCTAGCGGTGTTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGG                                                                                                                                                       <  1:325522/150‑1          CACCGTTCGCTATTGTGCTGATAGCGCAGCGGCTATCGCCTTTTCGTAGCCTGCCCTAGCGGTGTTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGATCTTGATCTTCGCGACTTAAGGAGGCCGAGCGGAGGGCGTGCTC                                                                                                                                               >  1:2530865/1‑150             CGTTCGCTATTGTGCTGATAGCGCAGCGGCTATCGCCTTTTCGTAGCCTGCCCTAGCGGTGTTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGATCTTGATCTTTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCTCCCG                                                                                                                                            <  1:1525929/150‑1                                   GCAGCGGCTATCGCCTTTTCGTAGCCTGCCCTAGCGGTGTTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGTAGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCC                                                                                                                      <  1:4833041/150‑1                                         GCTATCGCCTTTTCGTAGCCTGCCCTAGCGGTGTTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGATCTTGATCTTCGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTc                                                                                                                <  2:3092156/150‑2                                                        TAGCCTGCCCTAGCGGTGTTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGATCTTGATCTTCGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTCGGGCA‑CAGCGCTTGA                                                                                                <  1:1201097/150‑1                                                                 CTAGCGGTGTTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGATCTTGATCTTCGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTCGGGCA‑CAGCGCTTGACGGGCATCC                                                                                       <  1:4124974/150‑1                                                                 CTAGCGGTGTTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGATCTTGATCTTCGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTCGGGCA‑CAGCGCTTGACGGGCATCC                                                                                       <  2:2955686/150‑1                                                                 CTAGCGGTGTTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGATCTTGATCTTCGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTCGGGCA‑CAGCGCTTGACGGGCATCC                                                                                       <  1:271326/150‑1                                                                 CTAGCGGTGTTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGATCTTGATCTTCGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTCGGGCA‑CAGCGCTTGACGGGCATCC                                                                                       <  1:271317/150‑1                                                                                                       CTTTTGATCCTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGC‑GCAGGGAGGACCGCGCTGCAGGCCCCATCCTCGGGCA‑CAGCGCTTGACGGGCATCCATGCCCGTCA                                                                             <  1:3185332/121‑1                                                                                                       CTTTTGATCCTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGC‑GCAGGGAGGACCGCGCTGCAGGCCCCATCCTCGGGCA‑CAGCGCTTGACGGGCATCCATGCCCGTCA                                                                             >  2:3185332/1‑121                                                                                                            GATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGC‑GGAGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCA                                                                             <  1:4915015/117‑1                                                                                                            GATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGC‑GGAGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCA                                                                             >  2:4915015/1‑117                                                                                                                                                     AGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTCCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCATCGCCTGAACTACCGCGCGCTTAGAA   >  1:3624753/1‑150                                                                                                                                                      cGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTCCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCATCGCCTGAACTACCGCGCGCTTAGAAG  <  1:837467/149‑1                                                                                                                                                                                                                                                                                                              TTGGACAACCACCGTTCGCTATTGTGCTGATAGCGCAGCGGCTATCGCCTTTTCGTAGCCTGCCCTAGCGGTGTTTTCAGGTCTTGCCGGCTTTTGATCTGGCTTTTGATCCTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/851171‑851021 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCC‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTCCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCATCGCCTGAACTACCGCGCGCTTAGAAG  <  NC_002947/2087482‑2087335

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.