New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	867938 =	84 (0.510)	16 (0.110)	9/238	NT	17.7%	intergenic (+33/+144)	PP_0750/mqo‑I	hypothetical protein/malate:quinone oxidoreductase
	?	NC_002947	867998 =	74 (0.510)					intergenic (+93/+84)	PP_0750/mqo‑I	hypothetical protein/malate:quinone oxidoreductase

CAAGCACTACGCTTAAGCCGGTCTGAAACGCAAAAACGCCCCTCGGGGCGTTTTTTGTGCCTGGCGCTTGATCAGCCTGTACCGCCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/868097‑867938 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtgggagcgggcATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCGGCAC  >  NC_002947/867998‑868146                                                                                                                                                                                                                                                                                                                       CAAGCACTACGCTTAAGCCGGTCTGAAACGCAAAAACGCCCCTCGGGGCGTTTTTTGTGCCTGGCGCTTGATCAGCCTGTACCGCCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGT                                                                                                                                                                 <  2:949363/150‑1  AAGCACTACGCTTAAGCCGGTCTGAAACGCAAAAACGCCCCTCGGGGCGTTTTTTGTGCCTGGCGCTTGATCAGCCTGTACCGCCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTG                                                                                                                                                                <  2:5401639/150‑1  AAGCACTACGCTTAAGCCGGTCTGAAACGCAAAAACGCCCCTCGGGGCGTTTTTTGTGCCTGGCGCTTGATCAGCCTGTACCGCCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTG                                                                                                                                                                <  2:1188354/150‑1   AGCACTACGCTTAAGCCGGTCTGAAACGCAAAAACGCCCCTCGGGGCGTTTTTTGTGCCTGGCGCTTGATCAGCCTGTACCGCCCTCTTCGCGGGCATGCCCGCTCCCCCAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGG                                                                                                                                                               <  2:5011773/150‑1   AGCACTACGCTTAAGCCGGTCTGAAACGCAAAAACGCCCCTCGGGGCGTTTTTTGTGCCTGGCGCTTGATCAGCCTGTACCGCCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGG                                                                                                                                                               <  1:902933/150‑1   AGCACTACGCTTAAGCCGGTCTGAAACGCAAAAACGCCCCTCGGGGCGTTTTTTGTGCCTGGCGCTTGATCAGCCTGTACCGCCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGG                                                                                                                                                               <  1:5407132/150‑1   AGCACTACGCTTAAGCCGGTCTGAAACGCAAAAACGCCCCTCGGGGCGTTTTTTGTGCCTGGCGCTTGATCAGCCTGTACCGCCCTCGTCGCGGGCATGCCCGCTCCCACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGG                                                                                                                                                               <  2:61806/150‑1     CACTACGCTTAAGCCGGTCTGAAACGCAAAAACGCCCCTCGGGGCGTTTTTTGTGCCTGGCGCTTGATCAGCCTGTACCGCCCTCTTCGCGGGCATGCCCGCTCCCACCGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCGGTGGGA                                                                                                                                                             >  2:4094357/1‑150     CACTACGCTTAAGCCGGTCTGAAACGCAAAAACGCCCCTCGGGGCGTTTTTTGTGCCTGGCGCTTGATCAGCCTGTACCGCCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGGGA                                                                                                                                                             <  1:5195035/150‑1      ACTACGCTTAAGCCGGTCTGAAACGCAAAAACGCCCCTCGGGGCGTTTTTTGTGCCTGGCGCTTGATCAGCCTGTACCGCCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGGGAG                                                                                                                                                            >  2:5232925/1‑150        TACGCTTAAGCCGGTCTGAAACGCAAAAACGCCCCTCGGGGCGTTTTTTGTGCCTGGCGCTTGATCAGCCTGTACCGCCCACATCGCGGGCCTGCCCGCTCCCACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCGGGGGGCGCG                                                                                                                                                          >  1:4203906/1‑150         ACGCTTAAGCCGGTCTGAAACGCAAAAACGCCCCTCGGGGCGTTTTTTGTGCCTGGCGCTTGATCAGCCTGTACCGCCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGGGAGCGG                                                                                                                                                         <  1:1784403/150‑1         ACGCTTAAGCCGGTCTGAAACGCAAAAACGCCCCTCGGGGCGTTTTTTGTGCCTGGCGCTTGATCAGCCTGTACCGCCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGGGAGCGG                                                                                                                                                         <  2:725201/150‑1         ACGCTTAAGCCGGTCTGAAACGCAAAAACGCCCCTCGGGGCGTATTTTGTGCCTGGCGCTTGATCAGCCTGTACCGCCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGGGAGCGG                                                                                                                                                         <  2:4739115/150‑1              TAAGCCGGTCTGAAACGCAAAAACGCCCCTCGGGGCGTTTTTTGTGCCTGGCGCGTGATCAGCCTGTACCGCCCACTTCGCGGGCATGCCCGCTCCCCCAGGGTCGGGAATGCCCGCAGGTGCGGCGCGACTCCGGTGGGCGCGGGggcg                                                                                                                                                    >  1:270930/1‑146                               aAAAAACGCCCCGAGGGGCGTTTTTTGTGCCTGGCGCTTGATCAGCCTGTACCGCCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTG                                                                                                                                                                <  2:828152/120‑1                               aAAAAACGCCCCGAGGGGCGTTTTTTGTGCCTGGCGCTTGATCAGCCTGTACCGCCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTG                                                                                                                                                                >  1:828152/2‑121                                                                             CTGTACCGCCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTCGGTGATGCCCGCAGGTGCGGCGCGACTCCTGTGGGAGCGGGCGTGCCGGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTT                                                                                     >  1:2566142/1‑150                                                                             CTGTACCGCCCTCTTCGCGGGCATGCCCGCTCCCACAGGGTCGGTAATGCCCGCAGGTGCGGCGCGACTCCGGTGGGAGCGGGCGTGCCCGCGAAGAGGGCGGTACAGGCGGATCAAGCGCCAGGCACAAAAAAAGCCCCGAGGGGGGTT                                                                                     >  1:2566100/1‑150                                                                                              CGGGCATGCCCGCTCCCACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGG                                                                    >  1:2808312/1‑150                                                                                              CGGGCATGCCCGCTCCCACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGG                                                                    >  1:2808380/1‑150                                                                                               GGGCATGCCCGCTCCCACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGC                                                                   >  1:3667939/1‑150                                                                                                  CATGCCCGCTCCCACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTA                                                                >  1:2011539/1‑150                                                                                                      CCCGCTCCCACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCATTTCAGACCGGCTTAAGCG                                                            >  1:5267407/1‑150                                                                                                       CCGCTCCCACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGT                                                           >  1:2229699/1‑150                                                                                                           TCCCACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTG                                                                                 >  1:3310979/1‑124                                                                                                           TCCCACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTG                                                                                 <  2:3310979/124‑1                                                                                                            CCCACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGGGAGCGGGAGCGCCCGCGAAGAGGCCGGCACTGGCTGATCAAGCGCCAGGCACAAAAAAAGCCCCGAGGGGCGTTTTTGCGTTTAAGACCGGCTTAAGCGTAGTGC                                                      >  1:1727009/1‑150                                                                                                              CACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTT                                                    >  2:444873/1‑150                                                                                                              CACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTT                                                    >  2:749740/1‑150                                                                                                                                      TGCGGCGCGACTCCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAG                            <  2:2011539/150‑1                                                                                                                                       GCGGCGCGACTCCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCATTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGG                           <  2:5267407/150‑1                                                                                                                                            GCGACTCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGCACTGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAATCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAG                      >  1:1535715/1‑150                                                                                                                                              GACTCCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTG                                       <  1:4422556/131‑1                                                                                                                                              GACTCCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTG                                       >  2:4422556/1‑131                                                                                                                                                  CCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACCAAACACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGC                <  2:443425/150‑1                                                                                                                                                  CCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGC                >  2:1375332/1‑150                                                                                                                                                    TGTGGGAGCGGGCATGCACGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGT              >  2:3833348/1‑150                                                                                                                                                        ttcGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTT          >  1:3049304/4‑150                                                                                                                                                        GGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTT          >  2:2027880/1‑150                                                                                                                                                        GGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCG                                                                     <  2:1091835/91‑1                                                                                                                                                        GGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCG                                                                     >  1:1091835/1‑91                                                                                                                                                         GAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTA         <  2:3145187/150‑1                                                                                                                                                         GAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTA         >  1:3145187/1‑150                                                                                                                                                           GCGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATC       <  1:881140/150‑1                                                                                                                                                            CGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCG      <  2:965914/150‑1                                                                                                                                                             GGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCGG     <  2:2603781/150‑1                                                                                                                                                               GCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGC                                                             <  2:57908/92‑1                                                                                                                                                               GCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGC                                                             >  1:57908/1‑92                                                                                                                                                                CATGCCCGCGAAGAGGGCGGTACAGGCTGATCACGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCGGCAC  <  1:2847244/150‑1                                                                                                                                                                                                                                                                                                                       CAAGCACTACGCTTAAGCCGGTCTGAAACGCAAAAACGCCCCTCGGGGCGTTTTTTGTGCCTGGCGCTTGATCAGCCTGTACCGCCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/868097‑867938 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgtgggagcgggcATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCGTTTCAGACCGGCTTAAGCGTAGTGCTTGGCCGCCGGGCTGCTCTCTGCCAGGTCCAGGGCCGCGTCGTTATCGGCAC  >  NC_002947/867998‑868146

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.