New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 867952	85 (0.520)	15 (0.100)	9/238	NT	16.7%	intergenic (+47/+130)	PP_0750/mqo‑I	hypothetical protein/malate:quinone oxidoreductase
	?	NC_002947	= 867982	74 (0.510)					intergenic (+77/+100)	PP_0750/mqo‑I	hypothetical protein/malate:quinone oxidoreductase

GCCTGGACCTGGACGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/867796‑867952 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgctcccacaggTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGCACTGGCTACAGATCAGCCACGGGCTTTATCGATGATCTCGATGTACTCAGGGGCATTGCGCTGGTCGGCAATCTGCTCGACGAA  <  NC_002947/867982‑867834                                                                                                                                                                                                                                                                                                                    GCCTGGACCTGGACGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTC                                                                                                                                                              <  2:1372550/150‑1 GCCTGGACCTGGACGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTC                                                                                                                                                              <  2:4447792/150‑1   CTGGACCTGGACGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGTTCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCGCCC                                                                                                                                                            >  2:1168290/1‑150   CTGGACCTGGACGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCC                                                                                                                                                            <  1:1558364/150‑1    TGGACCTGGACGGCAAGGGCGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCGCCCc                                                                                                                                                           >  1:443425/1‑149    TGGACCTGGACGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCA                                                                                                                                                           <  1:3880126/150‑1    TGGACCTGGACGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCCCACCCA                                                                                                                                                           >  2:2890353/1‑150      GACCTGGACGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACA                                                                                                                                                         <  1:2140490/150‑1       ACCTGGACGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAG                                                                                                                                                        <  1:4964354/150‑1         CTGGACGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCCCGCCCACAGGT                                                                                                                                                      >  1:2603781/1‑150          TGGACGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCGCCCCCAcgag                                                                                                                                                     >  2:969504/1‑146               GGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGTTCGGTA                                                                                                                                                >  2:4677720/1‑150                  AAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCG                                                                                                                                                                 >  1:5380963/1‑130                  AAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCG                                                                                                                                                                 <  2:5380963/130‑1                            ACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGTGCCCGCTCCCACAGGTTCGGTAATGCCCGCAGGTG                                                                                                                                   >  2:4961578/1‑150                              GGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCA                                                                                                                                                           <  2:5139417/124‑1                              GGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCCCGCCCA                                                                                                                                                           >  1:5139417/1‑124                                           TCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGT                                                                                                                    <  1:3765331/150‑1                                           TCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGT                                                                                                                    <  2:3817505/150‑1                                            CGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTTCATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTG                                                                                                                   <  2:1735780/150‑1                                            CGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCTGTACCGCCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTG                                                                                                                   <  1:4350535/150‑1                                            CGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTG                                                                                                                   <  1:3744645/150‑1                                             GAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCTGTACCGCCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGG                                                                                                                  <  1:5279502/150‑1                                             GAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCTGTACCGCCCTCTTCGCGGGCATGCCCGCTCCCACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGG                                                                                                                  >  2:5279502/1‑150                                             GAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGG                                                                                                                  <  1:1942624/150‑1                                             GAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCC                                                                                                                                                             >  2:1061607/1‑107                                             GAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCC                                                                                                                                                             <  1:1061607/107‑1                                               GCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGGGA                                                                                                                <  1:834900/150‑1                                                       CCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGTGCCCGCTCCCACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGGGAGCGGGCGC                                                                                                        <  1:4961578/150‑1                                                       CCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGGGAGCGGGCGC                                                                                                        <  1:4677720/150‑1                                                                              TACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGGGA                                                                                                                <  2:1133861/119‑1                                                                              TACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGTTCGGTAAAGCCCGCAGGTGCGGCGCGACTCCGGTGGGA                                                                                                                >  1:1133861/1‑119                                                                                                                                           gcagGCCCGCTCCCACCGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGCACTGGCTACAGATCAGCCACGGGCTTTATCGATGATCTCGATGTACTCAGGGGCATTGCGCTGGTC                    <  2:2186365/146‑1                                                                                                                                                CCCGCTCCCACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGCACTGGCTACAGATCAGCCACGGGCTTTATCGATGATCTCGATGTACTCAGGGGCATTGCGCTGGTCGGCAA               >  2:3105629/1‑150                                                                                                                                                 CCGCTCCCACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGCACTGGCTACAGATCAGCCACGGGCTTTATCGATGATCTCGAAGTACTCAGGGGCATTGCGCTGGTCGGCAAg              >  1:4768365/1‑149                                                                                                                                                 CCGCTCCCACAGGTTCGGTAATGCCCGCAGGTGAGGCGCGACTCCTGTGGGAGCGGGAGCGCCCGCGAAGAGGCCGGCACTGGCTACAGATCAGCCACGGGCTTTATCGATGATCTCGATGTACTCAGGGGCATTGAGCTGGTCGGCAAT              >  2:3660392/1‑150                                                                                                                                                   GCTCCCACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGCACTGGCTACAGATCAGCCACGGGCTTTATCGATGATCTCGATGTACTCAGGGGCATTGCGCTGGTCGGCAATCT            >  2:1450821/1‑150                                                                                                                                                       CCACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGCACTGGCTACAGATCAGCCACGGGCTTTATCGATGATCTCGATGTACTCAGGGGCATTGCGCTGGTCGGCAATCTGCTC        >  2:3913392/1‑150                                                                                                                                                       CCACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGCACTGGCTACAGATCAGCCACGGGCTTTATCGATGATCTCGATGTACTCAGGGGCATTGCGCTGGTCGGCAATCTGCTC        >  2:1132121/1‑150                                                                                                                                                       CCACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGCACTGGCTACAGATCAGCCACGGGCTTTATCGATGATCTCGATGTACTCAGGGGCATTGCGCTGGTCGGCAATCTGCTC        >  2:1132497/1‑150                                                                                                                                                       CCACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGCACTGGCTACAGATCAGCCACGGGCTTTATCGATGATCTCGATGTACTCAGGGGCATTGCGCTGGTCGGCAATCTGCTC        >  2:3913260/1‑150                                                                                                                                                       CCACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGCACTGGCTACAGATCAGCCACGGGCTTTATCGATGATCTCGATGTACTCAGGGGCATTGCGCTGGTCGGCAATCTGCTC        >  2:273861/1‑150                                                                                                                                                        CACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGCACTGGCTACAGATCAGCCACGGGCTTTATCGATGATCTCGATGTACTCAGGGGCATTGCGCTGGTCGGCAATCTGCTCG       >  2:4736001/1‑150                                                                                                                                                        CACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGCACTGGCTACAGATCAGCCACGGGCTTTATCGATGATCTCGATGTACTCAGGGGCATTGCGCTGGTCGGCAATCTGCTCG       >  1:1172921/1‑150                                                                                                                                                        CACAGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGGGGGAGCGGGCGCGCCCGCGAAGAGGCCGGCACTGGCTACAGATCAGCCACGGGCTTTATCGATGATCTCGATGTACTCAGGGGCATTGCGCTGGTCGGCACTCTGCTCG       >  2:5378293/1‑150                                                                                                                                                           AGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGCACTGGCTACATATCAGCCACGGGCTTTATCGATGATCTCGATGTACTCAGGGGCATTGCGCTGGTCGGCAATCTGCTAGACG    >  1:441710/1‑150                                                                                                                                                           AGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGCACTGGCTACAGATCAGCCACGGGCTTTATCGATGATCTCGATGTACTCAGGGGCATTGCGCTGGTCGGCAATCTGCTCGACG    >  2:3625754/1‑150                                                                                                                                                           AGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGCACTGGCTACAGATCAGCCACGGGCTTTATCGATGATCTCGATGTACTCAGGGGCATTGCGCTGGTCGGCAATCTGCTCGACG    >  1:875955/1‑150                                                                                                                                                           AGGTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGCACTGGCTACAGATCAGCCACGGGCTTTATCGATGATCTCGATGTACTCAGGGGCATTGCGCTGGTCGGCAATCTGCTCGACG    >  1:875930/1‑150                                                                                                                                                             GTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGCACTGGCTACAGATCAGCCACGGGCTTTATCGATGATCTCGATGTACTCAGGGGCATTGCGCTGGTCGGCAATCTGCTCGACGAA  >  2:1220579/1‑150                                                                                                                                                             GTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGCACTGGCTACAGATCAGCCACGGGCTTTATCGATGATCTCGATGTACTCAGGGGCATTGCGCTGGTCGGCAATCTGCTCGACGAA  >  2:1220640/1‑150                                                                                                                                                                                                                                                                                                                    GCCTGGACCTGGACGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/867796‑867952 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgctcccacaggTTCGGTAATGCCCGCAGGTGCGGCGCGACTCCTGTGGGAGCGGGCGCGCCCGCGAAGAGGCCGGCACTGGCTACAGATCAGCCACGGGCTTTATCGATGATCTCGATGTACTCAGGGGCATTGCGCTGGTCGGCAATCTGCTCGACGAA  <  NC_002947/867982‑867834

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.