| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 917702 | 148 (0.900) | 11 (0.070) | 9/246 | NT | 7.1% | intergenic (‑133/+66) | PP_0798/opdC | GGDEF domain‑containing protein/histidine‑specific outer membrane porin D |
| ? | NC_002947 | = 917742 | 151 (1.000) | intergenic (‑173/+26) | PP_0798/opdC | GGDEF domain‑containing protein/histidine‑specific outer membrane porin D | |||||
TGCGAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGC‑‑GG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/917543‑917702‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaggagc‑‑gg‑‑TTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAGGGTCCACGGCAAATCGAAAAGTACGGTACACCGTGCTTCCGTCGGACAAATCTTGTCCGACAATGCCCGCTTCCCTAGAATATCGCCGCCGC < NC_002947/917742‑917598 TGCGAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTT > 2:3347818/1‑150TGCGAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTT > 2:2106896/1‑150 CGAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGT < 1:1066816/150‑1 CGAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGT < 1:29736/150‑1 CGAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGT < 1:514932/150‑1 CGAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGT < 1:3806890/150‑1 CGAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGT < 1:514907/150‑1 GAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTA < 1:4309492/150‑1 GAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTA < 2:2273845/150‑1 GAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTA < 2:2775054/150‑1 GAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTA > 1:4261383/1‑150 GAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTA > 2:3160028/1‑150 GAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTA > 1:3450511/1‑150 AAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATGTGCCGTGGACCCTTGTAG < 2:611950/150‑1 GCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGC < 1:4765757/150‑1 GCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGC < 1:3298414/150‑1 GGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGC‑‑GG < 2:3159284/150‑1 GGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGC‑‑GG > 1:979287/1‑150 GGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGC‑‑GG < 1:4806311/150‑1 GGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCAGTGTAGGAGC‑‑GG‑‑TTACCCGC < 2:2077277/150‑1 GGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGC‑‑GG‑‑TTACCCGCGAAGAAGGCTTCGCCGGTGTTCGC < 2:4377212/150‑1 AGGTCCTTTCGCGGCGGCGATATTCTAGGGAATCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGC‑‑GGGTTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCG < 2:3827322/150‑1 GGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGC‑‑GGGTTTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGG < 1:3794981/150‑1 CGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGC‑‑GG‑‑TTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGC < 1:5050274/150‑1 GGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGC‑‑GG‑‑TTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCC < 1:556422/150‑1 GGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGC‑‑GG‑‑TTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCC < 1:556390/150‑1 GCGGCGATATTCTTGGGAAGCGGGCTTTGTCGGACAAGTTTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGC‑‑GGGTTTACCCGCGAAGAAGGCTTCGCGGGTGTTCGCGGGTAAACCCGCTC < 2:2998532/150‑1 GGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGG‑‑TTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTC > 2:5282680/1‑148 GGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGCGGGG‑‑TTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTC < 1:5282680/148‑1 TTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCTTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGC‑‑GG‑‑TTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAGGGTC < 1:1474826/150‑1 TGTAGGAGC‑‑GG‑‑TTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAGGGTCCACGGCAAATCGAACAGTACGGTACCCCGTGCTTCCGTCGGACAAATCTTGTCCGACAATGCCCGCTTCCCTAGAATATCGC < 2:345639/150‑1 TAGGAGC‑‑GG‑‑TTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAGGGTCCACGGCAAATCGAAAAGTACGGTACACCGTGCTTCCGTCGGACAAATCTTGTCCGACAATGCCCGCTTCCCTAGAATATCGCCG > 2:2458157/1‑150 GGAGC‑‑GG‑‑TTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAGGGTCCACGGCAAATCGAAAAGTACGGTACACCGTGCTTCCGTCGGACAAATCTTGTCCGACAATGCCCGCTTCCCTAGAATATCGCCGCC > 2:1030245/1‑150 GAGC‑‑GG‑‑TTACCCGCGTAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAGGGTCCACGGCAAATCGAAAAGTACGGTACACCGTGCTTCCGTCGGACAAATCTTGTCCGACAATGCCCGCTTCCCTAGAATATCGCCGCCG > 2:3609956/1‑150 GAGC‑‑GG‑‑TTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAGGGTCCACGGCAAATCGAAAAGTACGGTACACCGTGCTTCCGTCGGACAAATCTTGTCCGACAATGCCCGCTTCCCTAGAATATCGCCGCCG > 2:245734/1‑150 GAGC‑‑GG‑‑TTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAGGGTCCACGGCAAATCGAAAAGTACGGTACACCGTGCTTCCGTCGGACAAATCTTGTCCGACAATGCCCGCTTCCCTAGAATATCGCCGCCG > 2:2415740/1‑150 GAGC‑‑GG‑‑TTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAGGGTCCACGGCAAATCGAAAAGTACGGTACACCGTGCTTCCGTCGGACAAATCTTGTCCGACAATGCCCGCTTCCCTAGAATATCGCCGCCG > 2:2209069/1‑150 GAGC‑‑GG‑‑TTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAGGGTCCACGGCAAATCGAAAAGTACGGTACACCGTGCTTCCGTCGGACAAATCTTGTCCGACAATGCCCGCTTCCCTAGAATATCGCCGCCG > 2:4942673/1‑150 GAGC‑‑GG‑‑TTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAGGGTCCACGGCAAATCGAAAAGTACGGTACACCGTGCTTCCGTCGGACAAATCTTGTCCGACAATGCCCGCTTCCCTAGAATATCGCCGCCG > 1:872731/1‑150 AGC‑‑GG‑‑TTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAGGGTCCACGGCAAATCGAAAAGTACGGTACACCGTGCTTCCGTCGGACAAATCTTGTCCGACAATGCCCGCTTCCCTAGAATATCGCCGCCGC < 1:74992/150‑1 AGC‑‑GG‑‑TTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAGGGTCCACGGCAAATCGAAAAGTACGGTACACCGTGCTTCCGTCGGACAAATCTTGTCCGACAATGCCCGCTTCCCTAGAATATCGCCGCCGC < 1:75052/150‑1 GC‑‑GG‑‑TTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAGGGTCCACGGCAAATCGAAAAGTACGGTA < 1:2238022/85‑1 GC‑‑GG‑‑TTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAGGGTCCACGGCAAATCGAAAAGTACGGTA > 2:2238022/1‑85 TGCGAAACGCGGGGATTGGGTGGGCATGCTCGCTACTGCGTGGGCAGGGCCATTCGCGGCGGCGATATTCTAGGGAAGCGGGCATTGTCGGACAAGATTTGTCCGACGGAAGCACGGTGTACCGTACTTTTCGATTTGCCGTGGACCCTTGTAGGAGC‑‑GG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/917543‑917702‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaggagc‑‑gg‑‑TTACCCGCGAAGAAGGCTTCGCCGGTGTTCGCGGGTAAACCCGCTCCTACAAGGGTCCACGGCAAATCGAAAAGTACGGTACACCGTGCTTCCGTCGGACAAATCTTGTCCGACAATGCCCGCTTCCCTAGAATATCGCCGCCGC < NC_002947/917742‑917598 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |