| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1819890 | 154 (0.940) | 7 (0.040) | 5/260 | NT | 5.8% | intergenic (+85/‑390) | rpoS/PP_1624 | RNA polymerase sigma S factor/group II intron‑encoding maturase |
| ? | NC_002947 | 3597776 = | 76 (0.480) | intergenic (‑369/+97) | PP_3172/nemA | group II intron‑encoding maturase/FMN‑linked N‑ethylmaleimide reductase | |||||
AAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATCTCGGGGCGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1819738‑1819890‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAACGGGCGCCTGCAAGAGCGCCCGTTTTTGCATCAAGCCTGCTTCAGGAACGGATAATCCGTATACCCTTCAGGCCCATTGGC > NC_002947/3597776‑3597923 AAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATCTCGGGGCGTTTTTGTGTGCGCCAGGCATGGCGCGTTGAGCGTATGCGCAA > 1:82172/1‑150 AGGGCTCACGCGCTTGCGCGAGATCCTTTAAAATAATGGTCTGTCATGCGTGTCTTTGTTCCAGTAGCTACCGCTTTAACAAAACACGCCCCGGTGATCTCGGGGCGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCATACGCGCAAC < 1:4622595/150‑1 AGGGCTCAAGCGCTTGCGCGAGATCCTTTAAAAGAATGGTCTGTCCAGCTAGTCATTGTTCCAGTAGCTAGCGCTGTAAAAAAAAACGCCCCGGTGATCTCGGGGCGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCATACGCGCAAC < 1:4622833/150‑1 AGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATCTCGGGGCGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCATACGCGCAAC < 2:841826/150‑1 GGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATCTCGGGGCGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACC > 1:2121700/1‑150 TCAAGCGCGTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATCTCGGGGCGATTTTGTGTGCGCCAGGCATGGCGGGTTGCGCATACGCGCAACgcgcc < 2:5400772/150‑6 GAAAAGAATGGTCTGTCCAGCTTGTAATTGTTCCAGTAGCTTGCGATGTAACAAAAAACGCCCCGGTGATCTCGGGGCGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCACTTGGCCACCACAACCAAGCGGGTT < 1:3119535/150‑1 GCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCACTTGGCCACCACAACCAAGCGG < 2:981368/57‑1 GCCAGGCATGGCGCGTTGCGCGTATGCGCAACCCACTTGGCCACCACAACCAAGCGG > 1:981368/1‑57 GGCATGGCGCGTTGCGCGTATGCGCAACCCACTTGGCCACCACAACCAAGCGGGT > 1:1778715/1‑55 GGCATGGCGCGTTGCGCGTATGCGCAACCCACTTGGCCACCACAACCAAGCGGGT < 2:4519855/55‑1 GGCATGGCGCGTTGCGCGTATGCGCAACCCACTTGGCCACCACAACCAAGCGGGT < 2:1778715/55‑1 GGCATGGCGCGTTGCGCGTATGCGCAACCCACTTGGCCACCACAACCAAGCGGGT > 1:4519855/1‑55 AACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAACGGGCGCCTGCAAGAGCGCCCGTTTTTGCATCAAGCCTGCTTCAGGAACGGATAATCCGTATACCCTTCAGGCCCATT > 1:3165388/1‑150 AACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAACGGGCGCCTGCAAGAGCGCCCGTTTGTGCATCAAGCCTGCTTCGGGAACGGATAATCCGTATACCCTTCAGGCCCATT > 2:1678666/1‑150 AACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAACGGGCGCCTGCAAGAGCGCCCGTTGTTGCATCAAGCCTGCTTCAGGAACGGATCATCCGTCTACCCTTCAGGCCCATT > 2:1678692/1‑150 ACCCACTTGGCCACCACACCCAAGCGGGTTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAACGGGCGCCTGCAAGAGCGCCCGTTTTTGCATCAAGCCTGCTTCAGGAACGGATAATCCGTATACCCTTCAGGCCCCTTG < 2:4984468/150‑1 ACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAACGGGCGCCTGCAAGAGCGCCCGTTTTTGCATCAAGCCTGCTTCAGGAACGGATAATCCGTATACCCTTCAGGCCCATTG > 1:2978953/1‑150 ACCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAACGGGCGCCTGCAAGAGCGCCCGTTGTTGCATCAAGCCTGCTTCAGGAACGGATAATCCGTATACCCTTCAGGCCCATTG > 2:4249730/1‑150 CCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAACGGGCGCCTGCAAGAGCGCCCGTTTTTGCATCAAGCCTGCTTCAGGAACGGATAATCCGTATACCCTTCAGGCCCATTGG > 2:3344708/1‑150 CCCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAACGGGCGCCTGCAAGAGCGCCCGTTTTTGCATCAAGCCTGCTTCAGGAACGGATAATCCGTATACCCTTCAGGCCCATTGG > 2:618496/1‑150 CCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAACGGGCGCCTGCAAGAGCGCCCGTTTTTGCATCAAGCCTGCTTCAGGAACGGATAATCCGTATACCCTTCAGGCCCATTGGC > 2:3876223/1‑150 CCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAACGGGCGCCTGCAAGAGCGCCCGTTTTTGCATCAAGCCTGCTTCAGGAACGGATAATCCGTATACCCTTCAGGCCCATTGGC < 2:5096133/150‑1 CCACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAACGGGCGCCTGCAAGAGCGCCCGTTTTTGCATCAAGCCTGCTTCAGGAACGGATAATCCGTATACCCTTCAGGCCCATTGGC < 1:1209798/150‑1 AAGGGCTCAAGCGCTTGCGCGAGATCCTTGAAAAGAATGGTCTGTCCAGCGAGTCATTGTTCCAGTAGCTAGCGCTGTAACAAAAAACGCCCCGGTGATCTCGGGGCGTTTTTGTGTGCGCCAGGCATGGCGCGTTGCGCGTATGCGCAACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1819738‑1819890‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccACTTGGCCACCACAACCAAGCGGGTTGCGCTTACGCGCAACGCGCCATGCCTGGCGCACACAAAAAACGGGCGCCTGCAAGAGCGCCCGTTTTTGCATCAAGCCTGCTTCAGGAACGGATAATCCGTATACCCTTCAGGCCCATTGGC > NC_002947/3597776‑3597923 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |