| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2976703 = | 165 (1.000) | 9 (0.060) | 7/254 | NT | 5.6% | coding (671/777 nt) | PP_2601 | IclR family transcriptional regulator |
| ? | NC_002947 | 2976742 = | 147 (0.940) | coding (710/777 nt) | PP_2601 | IclR family transcriptional regulator | |||||
CAGAAGAACGGGCGCAACAGACTGTGCGGTAATCGACCGGAATATTCCCTCAGGCAAACAGCTCGCTGGCGGGACTGGCCGCCGACAGCTCTTCTGCCGCCGACAACAATAGCGGTGCCAGCGCTGCGAGGCGGCTCTGTGCCAGCCGC‑‑‑GCGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2976858‑2976703‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctggCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGTTCTTCTGAAAAGCTGAACTTGGTTCTAAATTGTCGAGTA > NC_002947/2976742‑2976890 CAGAAGAACGGGCGCAACAGACTGTGCGGTAATCGACCGGAATATTCCCTCAGGCAAACAGCTCGCTGGCGGGACTGGCCGCCGACAGCTCTTCTGCCGCCGACAACAATAGCGGTGCCAGCGCTGCGAGGCGGCTCTGTGCCAGCCGC‑‑‑G < 2:3720552/150‑1 AGAAGAACGGGCGCAACAGACTGTGCGGTAATCGACCGGAATATTCCCTCAGGCAAACAGCTCGCTGGCGGGACTGGCCGCCGACAGCTCTTCTGCCGCCGACAACACTAGCGGTGCCAGCGCTGCGAGGCGGCTCTGTGCCAGCCGC‑‑‑GC > 2:4426371/1‑150 AGAAGAACGGGCGCAACAGACTGTGCGGTAATCGACCGGAATATTCCCTCAGGCAAACAGCTCGCTGGCGGGACTGGCCGCCGACAGCTCTTCTGCCGCCGACAACAATAGCGGTGCCAGCGCTGCGAGGCGGCTCTGTGCCAGCCGC‑‑‑GC > 1:4940337/1‑150 GAAGAACGGGCGCAACAGACTGTGCGGTAATCGACCGGAATATTCCCTCAGGCAAACAGCTCGCTGGCGGGACTGGCCGCCGACAGCTCTTCTGCCGCCGACAACAATAGCGGTGCCAGCGCTGCGAGGCGGCTCTGTGCCAGCCGC‑‑‑GCG > 1:5188213/1‑150 AGAACGGGCGCAACAGACTGTGCGGTAATCGACCGGAATATTCCCTCAGGCAAACAGCTCGCTGGCGGGACTGGCCGCCGACAGCTCTTCTGCCGCCGACAACAATAGCGGTGCCAGCGCTGCGAGGCGACTCTGTGCCAGCCGC‑‑‑GCGCT < 1:3818021/150‑1 GAACGGGCGCAACAGACTGTGCGGTAATCGACCGGAATATTCCCTCAGGCAAACAGCTCGCTGGCGGGACTGGCCGCCGACAGCTCTTCTGCCGCCGACAACAATAGCGGTGCCAGCGCTGCGAGGCGGCTCTGTGCCAGCCGC‑‑‑GCGCTG < 1:3799686/150‑1 AACGGGCGCAACAGACTGTGCGGTAATCGACCGGAATATTCCCTCAGGCAAACAGCTCGCTGGCGGGACTGGCCGCCGACAGCTCTTCTGCCGCCGACAACAATAGCGGTGCCAGCGCTGCGAGGCGGCTCTGTGCCAGCCGC‑‑‑GCGCTGG < 2:2082770/150‑1 AATAGCGGTGCCAGCGCTGCGAGGCGGCTCTGTGCCAGCCGC‑‑‑GCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGT > 1:2604638/1‑150 CGGTGCCAGCGCTGCGAGGCGGCTCTGTGCCAGCCGC‑‑‑GCGCTGGGCCCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTC < 1:2425886/127‑1 CGGTGCCAGCGCTGCGAGGCGGCTCTGTGCCAGCCGC‑‑‑GCGCTGGGCCCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTC > 2:2425886/1‑127 GTGCCAGCGCTGCGAGGCGGCTCTGTGCCAGCCGC‑‑‑GCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCC > 2:1969063/1‑150 GTGCCAGCGCTGCGAGGCGGCTCTGTGCCAGCCGC‑‑‑GCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCG > 2:2800366/1‑126 GTGCCAGCGCTGCGAGGCGGCTCTGTGCCAGCCGC‑‑‑GCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCG < 1:2800366/126‑1 CCAGCGCTGCGAGGCGGCTCTGTGCCAGCCGC‑‑‑GCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGTT > 1:671845/1‑150 CCAGCGCTGCGAGGCGGCTCTGTGCCAGCCGC‑‑‑GCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGTT > 2:3716237/1‑150 TGCGAGGCGGCTCTGTGCCAGCCGCGCAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGTTCTTC > 2:2801248/1‑150 CGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGTTCTTCTGAAAAGCTGAACTTGGTTCTAAATTGTC < 2:1795404/150‑1 CTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGTTCTTCTGAAAAGCTGAACTTGGTTCTAAATTGTCGA < 1:394580/150‑1 CTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGTTCTTCTGAAAAGCTGAACTTGGTTCTAAATTGTCGA < 1:3208252/150‑1 CTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGTTCTTCTGAAAAGCTGAACTTGGTTCTAAATTGTCGA < 2:4139722/150‑1 GCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGTTCTTCTGAAAAGCTGAACTTGGTTCTAAATTGTCGAGTA > 1:1260574/1‑150 CAGAAGAACGGGCGCAACAGACTGTGCGGTAATCGACCGGAATATTCCCTCAGGCAAACAGCTCGCTGGCGGGACTGGCCGCCGACAGCTCTTCTGCCGCCGACAACAATAGCGGTGCCAGCGCTGCGAGGCGGCTCTGTGCCAGCCGC‑‑‑GCGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2976858‑2976703‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctggCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGTTCTTCTGAAAAGCTGAACTTGGTTCTAAATTGTCGAGTA > NC_002947/2976742‑2976890 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |