| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3124418 | 107 (0.650) | 8 (0.050) | 7/252 | NT | 6.9% | intergenic (‑32/‑113) | PP_2739/PP_2740 | sensory box protein/MerR family transcriptional regulator |
| ? | NC_002947 | = 3124436 | 115 (0.740) | intergenic (‑50/‑95) | PP_2739/PP_2740 | sensory box protein/MerR family transcriptional regulator | |||||
GCTCGAAGGCCGGGTTGACGTAGATAAGGATGCTCTCATTGCCTTCCTGCTCGGCGACAACGATGCCATCGTTGGAATGTTCGACCATCAGTTGCAGGAGTTTTGCGTTGATCATGGGGCTCACCTACAGGCATTTCGTATGCGATGTGCGCCAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3124263‑3124418‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccaaaAGCTTCTGCAAGGAAGCCTTTGGCGCACATCGCATACGAAATGCCTGTAGGTGAGCCCCATGATCAACGCAAAACTCCTGCAACTGATGGTCGAACATTCCAACGATGGCATCGTTGTCGCCGAGCAGGAAGGCAATGAGAGCATCC < NC_002947/3124436‑3124290 GCTCGAAGGCCGGGTTGACGTAGATAAGGATGCTCTCATTGCCTTCCTGCTCGGCGACAACGATGCCATCGTTGGAATGTTCGACCATCAGTTGCAGGAGTTTTGCGTTGATCATGGGGCTCACCTACAGGCATTTCGTATGCGATGTGC > 2:3850716/1‑150GCTCGAAGGCCGGGTTGACGTAGATAAGGATGCTCTCATTGCCTTCCTGCTCGGCGACAACGATGCCATCGTTGGAATGTTCGACCATCAGTTGCAGGAGTTTTGCGTTGATCATGGGGCTCACCTACAGGCATTTCGTATGCGATGTGC < 1:412570/150‑1 CTCGAAGGCCGGGTTGACGTAGATAAGGATGCTCTCATTGCCTTCCTGCTCGGCTACAACTATGCCATAGTTGGAATGTTCGACCATCAGTTGCAGGAGTTTTGCGTTGATCATGGGGCTCACCTACAGGCATTTCGTATGCGATGTGCG > 2:757292/1‑150 TCGAAGGCCGGGTTGACGTAGATAAGGATGCTCTCATTGCCTTCCTGCTCGGCGACAACGATGCCATCGTTGGAATGTTCGACCATCAGTTGCAGGAGTTTTGCGTTGATCATGGGGCTCACCTACAGGCATTTCGTATGCGATGTGCGC < 2:1454945/150‑1 TCGAAGGCCGGGTTGACGTAGATAAGGATGCTCTCATTGCCTTCCTGCTCGGCGACAACGATGCCATCGTTGGAATGTTCGACCATCAGTTGCAGGAGTTTTGCGTTGATCATGGGGCTCACCTACAGGCATTTCGTATGCGATGTGCGC > 2:3836541/1‑150 TCGAAGGCCGGGTTGACGTAGATAAGGATGCTCTCATTGCCTTCCTGCTCGGCGACAACGATGCCATCGTTGGAATGTTCGACCATCAGTTGCAGGAGTTTTGCGTTGATCATGGGGCTCACCTACAGGCATTTCGTATGCGATGTGCGC > 2:1096884/1‑150 TCGAAGGCCGGGTTGACGTAGATAAGGATGCTCTCATTGCCTTCCTGCTCGGCGACAACGATGCCATCGTTGGAATGTTCGACCATCAGTTGCAGGAGTTTTGCGTTGATCATGGGGCTCACCTACAGGCATTTCGTATGCGATGTGCGC < 1:2910076/150‑1 TCGAAGGCCGGGTTGACGTAGATAAGGATGCTCACATTGCATTCCTGCTCGGCGACAACGATGCCATCGTTGGAATGTTCGACCATCAGTTGCAGGAGTTTTGCGTAGATCATGGGGCTCACCTACAGGCATTTCGTATGCGATGTGCGC > 2:3836548/1‑150 AGGCCGGGTTGACGTAGATAAGGATGCTCTCATTGCCTTCCTGCTCGGCGACAACGATGCCATCGTTGGAATGTTCGACCATCAGTTGCAGGAGTTTTGCGTTGATCATGGGGCTCACCTACAGGCATTTCGTATGCGATGTGCGCCAAA < 2:4602341/150‑1 GATGCTCTCAGTGCCTTCCTGCTCGGCGACAACGATGCCATCGTTGGAATGTTCGACCATCAGTTGCAGGAGTTTTGCGTTGATCATGGGGCTCACCTACAGGCATTTCGTATGCGATGGGCGCCAAAAGCTTCTGCAAGGAAGCCTTTG < 1:4746858/150‑1 ATGCTCTCATTGCCTTCCTGCTCGGCGACAACGATGCCATCGTTGGAATGTTCGACCATCAGTTGCAGGAGTTTTGCGTTGATCATGGGGCTCACCTTCAGGCATTTCGTATGCGATGTGCGCCAAAAGCTTCTGCAAGGAAGCCTTTGG < 2:4465588/150‑1 ATGCTCTCATTGCCTTCCTGCTCGGCGACAACGATGCCATCGTTGGAATGTTCGACCATCAGTTGCAGGAGTTTTGCGTTGATCATGGGGCTCACCTACAGGCATTTCGTATGCGATGTGCGCCAAAAGCTTCTGCAAGGAAGCCTTTGG < 2:4040255/150‑1 GCTCACCTACAGGCATTTCGTATGCGATGTGCGCCAAAAGCTTCTGCAAGGAAGCCTTTGGCGCACATCGCATACGAAATGCCTGTAGGTGAGCCCCATGATCAACGCAAAACTC < 1:3141164/115‑1 GCTCACCTACAGGCATTTCGTATGCGATGTGCGCCAAAAGCTTCTGCAAGGAAGCCTTTGGCGCACATCGCATACGAAATGCCTGTAGGTGAGCCCCATGATCAACGCAAAACTC > 2:3141164/1‑115 ACAGGCATTTCGTATGCGATGTGCGCCAAAGGCTTCCTTGCAGAAGCTTTTGGCGCACATCGCATACGAAATGCCTGTAGGTGAGCCCCATGATCAACGCAAAACTCCTGCAACTGATGGTCGAACATTCCAACGATGGCATCGTTGTC < 1:3720084/149‑1 ACAGGCATTTCGTATGCGATGTGCGCCAAAGGCTTCCTTGCAGAAGCTTTTGGCGCACATCGCATACGAAATGCCTGTAGGTGAGCCCCATGATCAACGCAAAACTCCTGCAACTGATGGTCGAACATTCCAACGATGGCATCGTTGTC > 2:3720084/1‑149 GCATTTCGTATGCGATGTGCGCCAAAGGCTTCCTTGCAGAAGCTTTTGGCGCACATCGCATACGAAATGCCTGTAGGTGAGCCCCATGATCAACGCAAAACTCCTGCAACTGATGGTCGAACATTCCAACGATGGCATCGTTGTCGCCGA > 1:2079778/1‑150 CCAAAAGCTTCTGCAAGGAAGCCTTTGGCGCACATCGCATACGAAATGCCTGTAGGTGAGCCCCATGATCAACGCAAAACTCCTGCAACTGATGGTCGAACATTCCAACGATGGCATCGTTGTCGCCGAGCAGGAAGGCAATGAGAGCAT > 1:1494613/1‑150 CAAAAGCTTCTGCAAGGAAGCCTTTGGCGCACATCGCATACGAAATGCCTGTAGGTGAGCCCCATGATCAACGCAAAACTCCTGCAACTGATGGTCGAACATTCCAACGATGGCATCGTTGTCGCCGAGCAGGAAGGCAATGAGAGCATC > 1:4168907/1‑150 AAAAGCTTCTGCAAGGAAGCCTTTGGCGCACATCGCATACGAAATGCCTGTAGGTGAGCCCCATGATCAACGCAAAACTCCTGCAACTGATGGTCGAACATTCCAACGATGGCATCGTTGTCGCCGAGCAGGAAGGCAATGAGAGCATCC < 1:2176385/150‑1 AAAAGCTTCTGCAAGGAAGCCTTTGGCGCACATCGCATACGAAATGCCTGTAGGTGAGCCCCATGATCAACGCAAAACTCCTGCAACTGATGGTCGAACATTCCAACGATGGCATCGTT > 2:2489744/1‑119 AAAAGCTTCTGCAAGGAAGCCTTTGGCGCACATCGCATACGAAATGCCTGTAGGTGAGCCCCATGATCAACGCAAAACTCCTGCAACTGATGGTCGAACATTCCAACGATGGCATCGTT < 1:2489744/119‑1 GCTCGAAGGCCGGGTTGACGTAGATAAGGATGCTCTCATTGCCTTCCTGCTCGGCGACAACGATGCCATCGTTGGAATGTTCGACCATCAGTTGCAGGAGTTTTGCGTTGATCATGGGGCTCACCTACAGGCATTTCGTATGCGATGTGCGCCAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3124263‑3124418‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccaaaAGCTTCTGCAAGGAAGCCTTTGGCGCACATCGCATACGAAATGCCTGTAGGTGAGCCCCATGATCAACGCAAAACTCCTGCAACTGATGGTCGAACATTCCAACGATGGCATCGTTGTCGCCGAGCAGGAAGGCAATGAGAGCATCC < NC_002947/3124436‑3124290 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |