New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3228634 =	109 (0.660)	13 (0.080)	11/252	NT	11.9%	intergenic (+22/‑493)	PP_2827/PP_2828	alcohol dehydrogenase/hypothetical protein
	?	NC_002947	3228656 =	90 (0.580)					intergenic (+44/‑471)	PP_2827/PP_2828	alcohol dehydrogenase/hypothetical protein

AGCGTTCAAGGCTGATTATTTGCCGGGATATTTCTGACATCCCGAAAACTACGGACTTATATGTAGTCCATATCGTGATTTATTGTAGGAACAGTCCTACTTTAAGTGTTGAATCACTTTATCCCGCGCACAA‑‑‑‑AAAACCCGGGACCTTGCCCGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3228790‑3228634 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgggtt‑‑‑‑TTTTGTGCGCGGGATAAAGTGATTCAACACTTAAAGTAGGACTGTTCCTACAATAAATCACGATATGGACTACATATAAGTCCGTAGTTTTCGGGATGTCAGAAATATCCCGGCAAATAATCAGCCTTGAACGCTTTTGCCTTGCGAGT  >  NC_002947/3228656‑3228804                                                                                                                                                                                                                                                                                                                            AGCGTTCAAGGCTGATTATTTGCCGGGATATTTCTGACATCCCGAAAACTACGGACTTATATGTAGTCCATATCGTGATTTATTGTAGGAACAGTCCTACTTTAAGTGTTGAATCACTTTATCCCGCGCACAA‑‑‑‑AAAACCCGGGACCTTGC                                                                                                                                                                  >  1:3752352/1‑150     TTCAAGGCTGATTATTTGCCGGGATATTTCTGACATCCCGAAAACTACGGACTTATATGTAGTCCATATCGTGATTTATTGTAGGAACAGTCCTACTTTAAGTGTTGAATCACTTTATCCCGCGCACAA‑‑‑‑AAAACCCGGGACCTTGCCCGG                                                                                                                                                              <  2:4082495/150‑1     TTCAAGGCTGATTATTTGCCGGGATATTTCTGACATCCCGAAAACTACGGACTTATATGTAGTCCATATCGTGATTTATTGTAGGAACAGTCCTACTTTAAGTGTTGAATCACTTTATCCCGCGCACAA‑‑‑‑AAAACCCGGGACCTTGCCCGG                                                                                                                                                              <  1:497050/150‑1     TTCAAGGCTGATTATTTGCCGGGATATTTCTGACATCCCGAAAACTACGGACTTATATGTAGTCCATATCGTGATTTATTGTAGGAACAGTACTACTTTAAGTGTTGAATCACTTTATCCCGCGCACAA‑‑‑‑AAAACCCGGGACCTTGCCCGG                                                                                                                                                              <  2:1331103/150‑1      TCAAGGCTGATTATTTGCCGGGATATTTCTGACATCCCGAAAACTACGGACTTATATGTAGTCCATATCGTGATTTATTGTAGGAACAGTCCTACTTTAAGTGTTGAATCACTTTATCCCGCGCACAA‑‑‑‑AAAACCCGGGACCTGGCCCGGG                                                                                                                                                             <  2:1589149/150‑1       CAAGGCTGAGTATTTGCCGGGATATTTCTGACATCCCGAAAACTACGGACTTATATGTAGTCCATATCGTGATTTATTGTAGGAACAGTCCTACTTTAAGTGTTGAATCACTTTATCCCGCGCACAA‑‑‑‑AAAACCCGGGACCTTGCCCGGGT                                                                                                                                                            <  2:2956098/150‑1        AAGGCTGATTATTTGCCGGGATATTTCTGACATCCCGAAAACTACGGACTTATATGTAGTCCATATCGTGATTTATTGTAGGAACAGTCCTACTTTAAGTGTTGAATCACTTTATCCCGCGCACAA‑‑‑‑AAAACCCGGGACCTTGCCCGGGTT                                                                                                                                                           >  1:1626081/1‑150        AAGGCTGATTATTTGCCGGGATATTTCTGACATCCCGAAAACTACGGACTTATATGTAGTCCATATCGTGATTTATTGTAGGAACAGTCCTACTTTAAGTGTTGAATCACTTTATCCCGCGCACAA‑‑‑‑AAAACCCGGGACCTTGCCCGGGTT                                                                                                                                                           >  1:4795217/1‑150            CTGATTATTTGCCGGGATATTTCTGACATCCCGAAAACTACGGACTTATATGTAGTCCATATCGTGATTTATTGTAGGAACAGTCCTACTTTAAGTGTTGAATCACTTTATCCCGCGCACAA‑‑‑‑AAAACCCGGGACCTTGCCCGGGTT‑‑‑‑TTTT                                                                                                                                                   <  2:4706352/150‑1                                 TCTGACATCCCGAAAACTACGGACTTATATGTAGTCCATATCGTGATTTATTGTAGGAACAGTCCTACTTTAAGTGTTGAATCACTTTATCCCGCGCACAA‑‑‑‑AAAACCCGGGCAAGGTCCCGGGTT‑‑‑‑TTTTGTGCGCGGGATAAAGTGATTC                                                                                                                              <  2:1867062/150‑1                                  CTGACATCCCGAAAACTACGGACTTATATGTAGTCCATATCGTGATTTATTGTAGGAACAGTCCTACTTTAAGTGTTGAATCACTTTATCCCGCGCACAAGCGGCGAACCCGGGCAAGGTCCCGGGTT‑‑‑‑TTTTGTGCGCGGGATAAAGTGA                                                                                                                                 <  2:3398191/150‑1                                  CTGACATCCCGAAAACTACGGACTTATATGTAGTCCATATCGTGATTTATTGTAGGAACAGTCCTACTTTAAGTGTTGAATCACTTTATCCCGCGCACAAGCGGCGAACCCGGGCAAGGTCCCGGGTT‑‑‑‑TTTTGTGCGCGGGATAAAGTGA                                                                                                                                 <  2:3397816/150‑1                                          CCGAAAACTACGGACTTATATGTAGTCCATATCGTGATTTATTGTAGGAACAGTCCTACTTTAAGTGTTGAATCACTTTATCCCGCGCACAA‑‑‑‑AAAACCCGGGACCTTGCCCGGGTT‑‑‑‑TTTT                                                                                                                                                   <  1:405980/120‑1                                          CCGAAAACTACGGACTTATATGTAGTCCATATCGTGATTTATTGTAGGAACAGTCCTACTTTAAGTGTTGAATCACTTTATCCCGCGCACAA‑‑‑‑AAAACCCGGGACCTTGCCCGGGTT‑‑‑‑TTTT                                                                                                                                                   >  2:405980/1‑120                                                              TGTAGTCCATATCGTGATTTATTGTAGGAACAGTCCTACTTTAAGTGTTGAATCACTTTATCCCGCGCACAA‑‑‑‑AAAACCCGGGCAAGGTCCCGGGTT‑‑‑‑TTTTGTGCGCGGGATAAAGTGATT                                                                                                                               <  2:821684/120‑1                                                              TGTAGTCCATATCGTGATTTATTGTAGGAACAGTCCTACTTTAAGTGTTGAATCACTTTATCCCGCGCACAA‑‑‑‑AAAACCCGGGCAAGGTCCCGGGTT‑‑‑‑TTTTGTGCGCGGGATAAAGTGATT                                                                                                                               >  1:821684/1‑120                                                                                                                             CGCGCACAA‑‑‑‑AAAACCCGGGACCTTGCCCGGGTTCGCCGCTTGTGCGCGGGATAAAGTGATTCAACACTTAAAGTAGGACTGTTCCTACAATAAATCACGATATGGACTACATATAAGTCCGTAGTTTTCGGGATGTCAGAAATATCCCGG                                      >  1:841777/1‑150                                                                                                                                    AA‑‑‑‑AAAACCCGGGACCTTGCCCGGGTT‑‑‑‑TTTTGTGCGCGGGATAAAGTGATTCAACACTTAAAGTAGGACTGTTCCTACAATAAATCACGATATGGACTACATATAAGTCCGTAGTTTTCGGGATGTCAGAAATATCCCGGCAAATAATCAG                           >  1:4116269/1‑150                                                                                                                                          AAAACCCGGGACCTTGCCCGGGTT‑‑‑‑TTTTGTGCGCGGGATAAAGTGATTCAACACTTAAAGTAGGACTGTTCCTACAATAAATCACGATATGGACTACATATAAGTCCGTAGTTTTCGGGATGTCAGAAATATCCCGGCAAATAATCAGCC                         >  2:3214211/1‑150                                                                                                                                           AAACCCGGGACCTTGCCCGGGTT‑‑‑‑TTTTGTGCGCGGGATAAAGTGATTCAACACTTAAAGTAGGACTGTTCCTACAATAAATCACGATATGGACTACATATAAGTCCGTAGTTTTCGG                                                         <  1:374443/117‑1                                                                                                                                           AAACCCGGGACCTTGCCCGGGTT‑‑‑‑TTTTGTGCGCGGGATAAAGTGATTCAACACTTAAAGTAGGACTGTTCCTACAATAAATCACGATATGGACTACATATAAGTCCGTAGTTTTCGG                                                         >  2:374443/1‑117                                                                                                                                             ACCCGGGACCTTGCCCGGGTT‑‑‑‑TTTTGTGCGCGGGATAAAGTGATTCAACACTTAAAGTAGGACTGTTCCTACAATAAATCACGATATGGACTACATATAAGTCCGTAGTTTTCGGGATGTCAGAAATATCCCGGCAAATAATCAGCCTTG                      >  2:2561158/1‑150                                                                                                                                               CCGGGACCTTGCCCGGGTT‑‑‑‑TTTTGTGCGCGGGATAAAGTGATTCAACACTTAAAGTAGGACTGTTCCTACAATAAATCACGATATGGACTACATATAAGTCCGTAGTTTTCGGGATGTCAGAAATATCCCGGCAAATAATCAGCCTTGAA                    >  2:1516025/1‑150                                                                                                                                               CCGGGACCTTGCCCGGGTT‑‑‑‑TTTTGTGCGCGGGATAAAGTGATTCAACACTTAAAGTAGGACTGTTCCTACAATAAATCACGATATGGACTACATATAAGTCCGTAGTTTTCGGGATGTCAGAAATATCCCGGCAAATAATCAGCCTTGAA                    >  2:1515996/1‑150                                                                                                                                                           CCGGGTT‑‑‑‑TTTTGTGCGCGGGATAAAGTGATTCAACACTTAAAGTAGGACTGTTCCTACAATAAATCACGATATGGACTACATATAAGTCCGTAGTTTTCGGGATGTCAGAAATATCCCGGCAAATAATCAGCCTTGAACGCTTTTGCCTT        >  2:797335/1‑150                                                                                                                                                            CGGGTT‑‑‑‑TTTTGTGCGCGGGATAAAGTGATTCAACACTTAAAGTAGGACTGTTCCTACAATAAATCACGATATGGACTACATATAAGTCCGTAGTTTTCGGGATGTCAGAAATATCCCGGCAAATAATCAGCCTTGAACGCTTTTGCCTTG       <  1:4850879/150‑1                                                                                                                                                            CGGGTT‑‑‑‑TTTTGTGCGCGGGATAAAGTGATTCAACACTTAAAGTAGGACTGTTCCTACAATAAATCACGATATGGACTACATATAAGTCCGTAGTTTTCGGGATGTCAGAAATATCCCGGCAAATAATCAGCCTTGAACGCTTTTGCCTTG       <  2:4864374/150‑1                                                                                                                                                             GGGTT‑‑‑‑TTTTGTGCGCGGGATAAAGTGATTCAACACTTAAAGTAGGACTGTTCCTACAATAAATCACGATATGGACTACATATAAGTCCGTAGTTTTCGGGATGTCAGAAATATCCCGGCAAATAATCAGCCTTGAACGCTTTTGCCTTGC      <  2:2701044/150‑1                                                                                                                                                             GGGTT‑‑‑‑TTTTGTGCGCGGGATAAAGTGATTCAACACTTAAAGTAGGACTGTTCCTACAATAAATCACGATATGGACTACATATAAGTCCGTAGTTTTCGGGATGTCAGAAATATCCCGGCAAATAATCAGCCTTGAACGCTTTTGCCTTGC      <  2:2700906/150‑1                                                                                                                                                             GGGTT‑‑‑‑TTTTGTGCGCGGGATAAAGTGATTCAACACTTAAAGTAGGACTGTTCCTACAATAAATCACGATATGGACTACATATAAGTCCGTAGTTTTCGGGATGTCA                                                  <  2:3684889/106‑1                                                                                                                                                             GGGTT‑‑‑‑TTTTGTGCGCGGGATAAAGTGATTCAACACTTAAAGTAGGACTGTTCCTACAATAAATCACGATATGGACTACATATAAGTCCGTAGTTTTCGGGATGTCA                                                  >  1:3684889/1‑106                                                                                                                                                             GGGTT‑‑‑‑TTTTGTGCGCGGGATAAAGTGATTCAACACTTAAAGTAGGACTGTTCCTAC                                                                                                    >  2:3865815/1‑56                                                                                                                                                             GGGTT‑‑‑‑TTTTGTGCGCGGGATAAAGTGATTCAACACTTAAAGTAGGACTGTTCCTAC                                                                                                    <  1:3865815/56‑1                                                                                                                                                               GTT‑‑‑‑TTTTGTGCGCGGGATAAAGTGATTCAACACTTAAAGTATGACTGTTCCTACAATAAATCACGATATGGACTACATATAAGTCCGTAGTTTTCGGGATGTCAGAAATATCCCGGCAAATAATCAGCCTTGAACGCTTTTGCCTTGCGA    <  2:2282680/150‑1                                                                                                                                                               GTT‑‑‑‑TTTTGTGCGCGGGATAAAGTGATTCAACACTTAAAGTAGGACTGTTCCTACAATAAATCACGATATGGACTACATATAAGTCCGTAGTTTTCGGGATGTCAGAAATATCCCGGCAAATAATCAGCCTTGAACGCTTTTGCCTTGCGA    <  2:10363/150‑1                                                                                                                                                                 T‑‑‑‑TTTTGTGCGCGGGATAAAGTGATTCAACACTTAAAGTAGGACTGTTCCTACAATAAATCACGATATGGACTACATATAAGTCCGTAGTTTTCGGGATGTCAGAAATATCCCGGCAAATAATCAGCCTTGAACGCTTTTGCCTTGCGAGT  >  1:4553721/1‑150                                                                                                                                                                                                                                                                                                                            AGCGTTCAAGGCTGATTATTTGCCGGGATATTTCTGACATCCCGAAAACTACGGACTTATATGTAGTCCATATCGTGATTTATTGTAGGAACAGTCCTACTTTAAGTGTTGAATCACTTTATCCCGCGCACAA‑‑‑‑AAAACCCGGGACCTTGCCCGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3228790‑3228634 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgggtt‑‑‑‑TTTTGTGCGCGGGATAAAGTGATTCAACACTTAAAGTAGGACTGTTCCTACAATAAATCACGATATGGACTACATATAAGTCCGTAGTTTTCGGGATGTCAGAAATATCCCGGCAAATAATCAGCCTTGAACGCTTTTGCCTTGCGAGT  >  NC_002947/3228656‑3228804

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.