| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3358309 = | 116 (0.700) | 11 (0.070) | 10/268 | NT | 8.1% | coding (504/891 nt) | PP_2952 | LysR family transcriptional regulator |
| ? | NC_002947 | 3358347 = | 135 (0.820) | coding (466/891 nt) | PP_2952 | LysR family transcriptional regulator | |||||
TTCTCTCCGACCAGATCGCCGATCTTTTTCGCGATCCGGTAGATATCGCCATCCGCTATGGCCTGAACGCCGACGCCAACTATATAGCCCTGCCACTGGCACCTTGGAACCGCAAGGTGCTGGTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3358436‑3358309‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGGCTATATAGTTGGCGTCGGCGTTCAGGCCATAGCGGATGGCGATATCTACCGGATCGCGAAAAAGATCGGCGATCTGGTCGGAGAGAAACAAGCGCAGGTTCAACTGTGGATGC > NC_002947/3358347‑3358462 TTCTCTCCGACCAGATCGCCGATCTTTTTCGCGATCCGGTAGATATCGCCATCCGCTATGGCCTGAACGCCGACGCCAACTATATAGCCCGGCCACCAGCACCTTGCGGTTCCAAGGTGCCAGTGGCAGGGCTATATAGTTG > 1:1637765/1‑142TTCTCTCCGACCAGATCGCCGATCTTTTTCGCGATCCGGTAGATATCGCCATCCGCTATGGCCTGAACGCCGACGCCAACTATATAGCCCGGCCACCAGCACCTTGCGGTTCCAAGGTGCCAGTGGCAGGGCTATATAGTTG < 2:1637765/142‑1 TATATAGCCCTGCCACTGGCACCTTGGAACCGCAAGGTGCTGGTGGCCGGGCTATATAGTTGGCGTCGGCGTTCAGGCCATAGCGGATGGCGATATCTACCGGATCGCGAAAAAGATCGGCGATCTGGTCGGAGAGAAACAAGCGCAGGT > 1:1986991/1‑150 CCTGCCACTGGCACCTTGGAACCGCAAGGTGCTGGTGGCAGGGCTATATAGTTGGCGTCGGCGTTCAGGCCATAGCGGATGGCGATATCTACCGGATCGCGAAAAAGATCGGCGATCTGGTCGGAGAGAAACAAGCGCAGGTTCAACTGT > 1:4870219/1‑150 TGCCACTGGCACCTTGGAACCGCAAGGTGCTGGTGGCAGGGCTATATAGTTGGCGTCGGCGTTCAGGCCATAGCGGATGGCGATATCTACCGTATCGCGAAAAAGATCGGCGATCTGGTCGGAGAGAAACAAGCGCAGGTTCAACTGTGG > 1:918027/1‑150 TGCCACTGGCACCTTGGAACCGCAAGGTGCTGGTGGCAGGGCTATATAGTTGGCGTCGGCGTTCAGGCCATAGCGGATGGCGATATCTACCGGCTCGCGAAAAAGATCGGCGATCTGGTCGGAGAGAAACAAGCGCAGGTTCAACTGTGG > 2:3864461/1‑150 ACTGGCACCTTGGAACCGCAAGGTGCTGGTGGCAGGGCTATATAGTTGGCGTCGGCGTTCAGGCCATAGCGGATGGCGATATCTACCGGATCGCGAAAAAGATCGGCGATCTGGTCGGAGAGAAACAAGCGCAGGTTCAACTGTGGATGC > 2:4824471/1‑150 CTGGCACCTTGGAACCGCAAGGTGCTGGTGGCAGGGCTATATAGTTGGCGTCGGCGTTCAGGCCATAGCGGATGGCGATATCTACCGGATCGCGAAAAAGATCGGCGATCTGGTCGGAGAGAAACAAGCGCA > 1:5423732/1‑132 CTGGCACCTTGGAACCGCAAGGTGCTGGTGGCAGGGCTATATAGTTGGCGTCGGCGTTCAGGCCATAGCGGATGGCGATATCTACCGGATCGCGAAAAAGATCGGCGATCTGGTCGGAGAGAAACAAGCGCA < 2:5423732/132‑1 TGGCACCTTGGAACCGCAAGGTGCTGGTGGCAGGGCTATATAGTTGGCGTCGGCGTTCAGGCCATAGCGGATGGCGATATCTACCGGATCGCGAAAAAGATC < 1:512174/102‑1 TGGCACCTTGGAACCGCAAGGTGCTGGTGGCAGGGCTATATAGTTGGCGTCGGCGTTCAGGCCATAGCGGATGGCGATATCTACCGGATCGCGAAAAAGATC > 2:512174/1‑102 TTCTCTCCGACCAGATCGCCGATCTTTTTCGCGATCCGGTAGATATCGCCATCCGCTATGGCCTGAACGCCGACGCCAACTATATAGCCCTGCCACTGGCACCTTGGAACCGCAAGGTGCTGGTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3358436‑3358309‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGGCTATATAGTTGGCGTCGGCGTTCAGGCCATAGCGGATGGCGATATCTACCGGATCGCGAAAAAGATCGGCGATCTGGTCGGAGAGAAACAAGCGCAGGTTCAACTGTGGATGC > NC_002947/3358347‑3358462 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |