| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4081380 = | 107 (0.650) | 7 (0.050) | 6/220 | NT | 8.3% | intergenic (‑218/+166) | sdaC/amaC | serine:H+ symport permease/D‑lysine aminotransferase |
| ? | NC_002947 | 4081497 = | 66 (0.490) | intergenic (‑335/+49) | sdaC/amaC | serine:H+ symport permease/D‑lysine aminotransferase | |||||
AGTAACTCGCCAACGGGCCAACTGCGGCCCCTCCTGTGGGGCGCGGTTGGACTTTGTGGGAGCGGCCTTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAAGGCCGCTCCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4081550‑4081380‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgcgacgcaaggccgctcccacaAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGGCCGCTGTCGATCAGGTACACGCCG > NC_002947/4081497‑4081645 AGTAACTCGCCAACGGGCCAACTGCGGCCCCTCCTGTGGGGCGCGGTTGGACTTTGTGGGAGCGGCCTTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCG < 1:5381264/150‑1 AACTCGCCAACGGGCCAACTGCGGCCCCTCCTGTGGGGCGCGGTTGGACTTTGTGGGAGCGGCCTTTCGTCGCGAAAAGGGTTCGGAGCGCCCCTAAGATTGCAGGTTTTCCGCTGAAATTTCTGGGGCCGCTTTTCGGCCCTATCGCGA > 2:1674390/1‑150 ACTCGCCAACGGGCCAACTGCGGCCCCTCCTGTGGGGCGCGGTTGGACTTTGTGGGAGCGGCCTTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGTCCGCTTTGCGGCCCTATCGCGAC < 1:3769698/150‑1 ACTCGCCAACGGGCCAACTGCGGCCCCTCCTGTGGGGCGCGGTTGGACTTTGTGGGAGCGGCCTTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGAC < 2:3327401/150‑1 GCCAACGGGCCAACTGCGGCCCCTCCTGTGGGGCGCGGTTGGACTTTGTGGGAGCGGCCTTGCGTCGCGGAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAA > 2:4064833/1‑150 GCCAACGGGCCAACTGCGGCCCCTCCTGTGGGGCGCGGTTGGACTTTGTGGGAGCGGCCATTCGTCGCGAAAAGGGTGCGGAGCGCCCCAAAGAATTCACCATTGCCGCGGAAAATGCTGGGGCCGCTTTTCGGCCCAAACACGACGCAA > 2:983017/1‑150 CCAACGGGCCAACTGCGGCCCCTCCTGTGGGGCGCGGTTGGACTTTGTGGGAGCGGCCTTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAAG < 1:38877/150‑1 CAACGGGCCAACTGCGGCCCCTCCTGTGGGGCGCGGTTGGACTTTGTGGGAGCGGCCTTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAAGG < 2:3628246/150‑1 CAACGGGCCAACTGCGGCCCCTCCTGGGGGGCGCGGTTGGACTTTGTGGGAGCGGCCTTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGACCTTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAAGG < 2:3628267/150‑1 ACGGGCCAACTGCGGCCCCTCCTGTGGGGCGCGGTTGGACTTTGTGGGAGCGGCCTTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAAGGCC < 1:3109105/150‑1 GGGCCAACTGCGGCCCCTCCTGTGGGGCGCGGTTGGACTTTGTGGGAGCGGCCTTGCGTCGCGAAAAGGGTGCGGTGCGCCCCTACGATTGCAGCATTGCCGCTGAAATTGCTGGGGCCGCGTTGCGGCCCTATCGCGACGCAAGGCCGC > 2:3466401/1‑150 CAACTGCGGCCCCTCCTGTGGGGCGCGGTTGGACTTTGTGGGAGCGGCCTTGCGTCGCGCAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGACAATGCGGGGGCCGCGTTGCGGCCCTATCGCGACGCAAGGCCGCGCCC > 2:1584353/1‑150 ACTGCGGCCCCTCCTGTGGGGCGCGGTTGGACTTTGTGGGAGCGGCCGTGCGGCGCGGAAATGGTGCGGAGCGCCCCTACGATTTCAGCTTTTCCGCTGAAATTGCTGGGGCCGCGTTGCGGCCCTATCGCGGCGCAAGGCCGCTCCCAC > 2:4165976/1‑150 GCCCCTCCTGTGGGGCGCGGTTGGACTTTGTGGGAGCGGCCTTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGAC > 2:1334156/1‑128 GCCCCTCCTGTGGGGCGCGGTTGGACTTTGTGGGAGCGGCCTTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGAC < 1:1334156/128‑1 CCTTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTG > 1:2095323/1‑150 TTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGC > 2:1225111/1‑150 TTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGC > 1:5187495/1‑150 GTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGT > 1:2424032/1‑150 GCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTAC > 2:480695/1‑150 CGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACT > 1:4851968/1‑150 AAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGCCAACCCGTTGCAGGTTGTCC < 2:2095323/150‑1 cgccCGACGCCACCCCGCTCCCACAAAGTCCAACCGCGCCCCACTGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGG < 1:3835455/146‑1 GCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGGCCG > 1:4709358/1‑150 GCGACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGGTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGGCCG > 1:3302406/1‑150 gcCGCACGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGGCCGCT < 2:636619/148‑1 GACGCACGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGGCCGCT < 2:1558570/150‑1 GACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGGCCGCT > 1:1944110/1‑150 GACGCAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGGCCGCT > 1:1944183/1‑150 caccGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGGCCGCTGTCG < 1:2152216/146‑1 CAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGGCCGCTGTCG > 1:4449145/1‑150 CAAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGGCCGCTGTCG > 1:4448601/1‑150 AAGGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGGCCGCTGTCGA < 2:4951805/150‑1 GGCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTTGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGGCCGCTGTCGATC > 2:3431550/1‑150 GCCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGGCCGCTGTCGATCA < 1:4486681/150‑1 CCGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGGCCGCTGTCGATCAG < 1:5364129/150‑1 CGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGGCCGCTGTCGATCAGG < 1:1201590/150‑1 CGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGGCCGCTGTCGATCAGG < 2:766985/150‑1 CGCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGGCCGCTGTCGATCAGG < 2:5187495/150‑1 GCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAG > 1:5191999/1‑100 GCTCCCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAG < 2:5191999/100‑1 CCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGGCCGCTGTCGATCAGGTACAC > 2:3215706/1‑150 CCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGGCCGCTGTCGATCAGGTACAC > 1:450353/1‑150 CCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGG > 2:1955700/1‑116 CCACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGG < 1:1955700/116‑1 ACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGGCCGCTGTCGATCAGGTACACGC > 2:3790140/1‑150 ACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGGCCGCTGTCGATCAGGTACACG < 1:1741104/149‑1 ACAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGGCCGCTGTCGATCAGGTACACG > 2:1741104/1‑149 CAAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGGCCGCTGTCGATCAGGTACACGCC > 1:320947/1‑150 AAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGGCCGCTGTCGATCAGGTACACGCCG > 1:409024/1‑150 AGTAACTCGCCAACGGGCCAACTGCGGCCCCTCCTGTGGGGCGCGGTTGGACTTTGTGGGAGCGGCCTTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAAGGCCGCTCCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4081550‑4081380‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgcgacgcaaggccgctcccacaAAGTCCAACCGCGCCCCACAGGAGGGGCCGCAGTTGGCCCGTTGGCGAGTTACTTCTGAACGGCAGCGAACGCTTCGGCAACCCGTTGCAGGTTGGCCGGGCGCAGGCCGGACATGCACACACGGCCGCTGTCGATCAGGTACACGCCG > NC_002947/4081497‑4081645 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |