| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4589939 = | 167 (1.010) | 12 (0.070) | 10/262 | NT | 7.2% | intergenic (‑157/‑165) | PP_4063/ivd | long‑chain fatty acid‑‑CoA ligase/isovaleryl‑CoA dehydrogenase |
| ? | NC_002947 | 4590051 = | 144 (0.900) | intergenic (‑269/‑53) | PP_4063/ivd | long‑chain fatty acid‑‑CoA ligase/isovaleryl‑CoA dehydrogenase | |||||
CTTGTTCTTGAAATTGGGTTACACCATAGCTTGGGATCCGGCCCCGCCCCCTGTGGGAGCGGGCATGCCCGCGAATACGTCAGCAGGGTCACCGTCATTACCTGATTGGTCGCATTCGCGGGCAAGCCCGCTCCCACAGAGGGCGGCGTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4590090‑4589939‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcCGGATCCCAAGCTATGGTGTAACCCAATTTCAAGAACAAGAAGGTGCCCCAGCATGCATTACCCCTCCCTGAACTTCGCCCTGGGCGAGACCATCGACATGCTCCGCGACCAGGTGCGCACCTTCGTCGCCGCTGAACTGGCCCCAAGG > NC_002947/4590051‑4590199 cgtgaaCTTGAAATTGGGTTACACCATAGCTTGGGATCCGGCCCCGCCCCCTGTGGGAGAGGGCATTCCCGCGAATACGTCAGCAGGGTCACCGTCATTACCTGATTGGTCGCATTCGCGGGCAAGCCCGCTCCCACAGAGGGCGGCGTG > 2:441902/7‑150CTTGTTCTTGAAATTGGGTTACACCATAGCTTGGGATCCGGCCCCGCCCCCTGTGGGAGCGGGCATGCCCGCGAATACGTCAGCAGGGTCACCGTCATTACCTGATTGGTCGCATTCGCGGGCAAGCCCGCTCCCACAGAGGGCGGCGTG < 1:2512675/150‑1CTTGTTCTTGAAATTGGGTTACACCATAGCTTGGGATCCGGCCCCGCCCCCTGTGGGAGCGGGCATGCCCGCGAATACGTCAGCAGGGTCACCGTCATAACCAGATTGGTCGCATTCGCGGGCAAGCCCGCTCCCACAGAGCGCGGCGTG > 2:5033323/1‑150 TTGTTCTTGAAATTGGGTTACACCATAGCTTGGGATCCGGCCCCGCCCCCTGTGGGAGCGGGCATGCCCGCGAATACGTCAGCAGGGTCACCGTCATTACCTGATTGGTCGCATTCGCGGGCAAGCCCGCTCCCACAGAGGGCGGCGTGG < 2:3201028/150‑1 TGTTCTTGAAATTGGGTTACACCATAGCTTGGGATCCGGCCCCGCCCCCTGTGGGAGCGGGCATGCCCGCGAATACGTCAGCAGGGTCACCGTCATTACCTGATTGGTCGCATTCGCGGGCAAGCCCGCTCCCACAGAGGGCGGCGTGGC > 1:3197148/1‑150 TGTTCTTGAAATTGGGTTACACCATAGCTTGGGATCCGGCCCCGCCCCCTGTGGGAGCGGGCATGCCCGCGAATACGTCAGCAGGGTCACCGTCATTACCTGATTGGTCGCATTCGCGGGCAAGCCCGCTCCCACAGAGGGCGGCGTGGC > 1:3197295/1‑150 GGCATGCCCGCGAATACGTCAGCAGGGTCACCGTCATTACCTGATTGGTCGCATTCGCGGGCAAGCCCGCTCCCACAGAGGGCGGCGTGGCCGGATCCCAAGCTATGGTGTAACCCAATTTCAA < 2:4185288/124‑1 GGCATGCCCGCGAATACGTCAGCAGGGTCACCGTCATTACCTGATTGGTCGCATTCGCGGGCAAGCCCGCTCCCACAGAGGGCGGCGTGGCCGGATCCCAAGCTATGGTGTAACCCAATTTCAA > 1:4185288/1‑124 GCATGCCCGCGAATACGTCAGCAGGGTCACCGTCATTACCTGATTGGTCGCATTCGCGGGCAAGCCCGCTCCCACAGAGGGCGGCGTGGCCGGATCCCAAGCTATGGTGTAACCCAATTTCAAGAACAAGAA < 1:2142633/132‑1 GCATGCCCGCGAATACGTCAGCAGGGTCACCGTCATTACCTGATTGGTCGCATTCGCGGGCAAGCCCGCTCCCACAGAGGGCGGCGTGGCCGGATCCCAAGCTATGGTGTAACCCAATTTCAAGAACAAGAA > 2:2142633/1‑132 ATGCCCGCGAATACGTCAGCAGGGTCACCGTCATTACCTGATTGGTCGCATTCGCGGGCAAGCCCGCTCCCACAGGGGGCGG‑‑‑GGCCGGATCCCAAGCTATGGTGTAACCCAATTTCAAGAACAAGAAGGTGCCCCAGCATGCATTACCCC > 2:2169069/1‑150 CCGCGAATACGTCAGCAGGGTCACCGTCATTACCTGATTGGTCGCATTCGCGGGCAAGCCCGCTCCCACAGAGGGCGG‑‑‑GGCCGGATCCCAAGCTATGGT > 2:4344172/1‑99 CCGCGAATACGTCAGCAGGGTCACCGTCATTACCTGATTGGTCGCATTCGCGGGCAAGCCCGCTCCCACAGAGGGCGG‑‑‑GGCCGGATCCCAAGCTATGGT > 2:1598587/1‑99 CCGCGAATACGTCAGCAGGGTCACCGTCATTACCTGATTGGTCGCATTCGCGGGCAAGCCCGCTCCCACAGAGGGCGG‑‑‑GGCCGGATCCCAAGCTATGGT < 1:1598587/99‑1 CCGCGAATACGTCAGCAGGGTCACCGTCATTACCTGATTGGTCGCATTCGCGGGCAAGCCCGCTCCCACAGAGGGCGG‑‑‑GGCCGGATCCCAAGCTATGGT < 1:4344172/99‑1 CGCGAATACGTCAGCAGGGTCACCGTCATTACCTGATTGGTCGCATTCGCGGGCAAGCCCGCTCCCACAGAGGGCGG‑‑‑GGCCGGATCCCAAGCTATGGTGTAACCCAATTTCAAGAACAAGAAGGTGCCCCAGCATGCATTACCCCTCCCT > 2:4291969/1‑150 AGGGCGGCGTGGCCGGATCCCAAGCTATGGTGTAACCCAATTTCAAGAACAAGAAGGTGCCCCAGCATGCATTACCCCTCCCTGAACTTCGCCCTGGGCGA > 2:4523887/1‑101 AGGGCGGCGTGGCCGGATCCCAAGCTATGGTGTAACCCAATTTCAAGAACAAGAAGGTGCCCCAGCATGCATTACCCCTCCCTGAACTTCGCCCTGGGCGA < 1:4523887/101‑1 GGCCGGATCCCAAGCTATGGTGTAACCCAATTTCAAGAACAAGAAGGTGCCCCAGCATGCATTACCCCTCCCTGAACTTCGCCCTGGGCGAGACCATCGACATGCTCCGCGACCAGGTGCGCACCTTCGTCGCCGCTGAACTGGCCCCAA > 1:558471/1‑150 GGCCGGATCCCAAGCTATGGTGTAACCCAATTTCAAGAACAAGAAGGTGCCCCAGCATGCATTACCCCTCCCTGAACTTCGCCCTGGGCGAGACCATCGACATGCTCCGCGACCAGGTGCGCACCTTCGTCGCCGCTGAACTGGCCCCAA < 1:407305/150‑1 GCCGGATCCCAAGCTATGGTGTAACCCAATTTCAAGAACAAGAAGGTGCCCCAGCATGCATTACCCCTCCCTGAACTTCGCCCTGGGCGAGACCATCGACATGCTCCGCGACCAGGTGCGCACCTTCGTCGCCGCTGAACTGGCCCCAAG > 1:2637129/1‑150 CCGGATCCCAAGCTATGGTGTAACCCAATTTCAAGAACAAGAAGGTGCCCCAGCATGCATTACCCCTCCCTGAACTTCGCCCTGGGCGAGACCATCGACATGCTCCGCGACCAGGTGCGCACCTTCGTCGCCGCTGAACTGGCCCCAAGG > 1:528324/1‑150 CCGGATCCCAAGCTATGGTGTAACCCAATTTCAAGAACAAGAAGGTGCCCCAGCATGCATTACCCCTCCCTGAACTTCGCCCTGGGCGAGACCATCGACATGCTCCGCGACCAGGTGCGCACCTTCGTCGCCGCTGAACTGGCCCCAAGG > 1:1809567/1‑150 CCGGATCCCAAGCTATGGTGTAACCCAATTTCAAGAACAAGAAGGTGCCCCAGCAGGCATTACCCCTCCCTGAACTACGCCCTGGGCGAGACCATCGACATGCTCCGCGACCAGGTGCGCACCTACGACGCCGCTGAACTGGCCCCAAcg > 1:4552073/1‑148 CTTGTTCTTGAAATTGGGTTACACCATAGCTTGGGATCCGGCCCCGCCCCCTGTGGGAGCGGGCATGCCCGCGAATACGTCAGCAGGGTCACCGTCATTACCTGATTGGTCGCATTCGCGGGCAAGCCCGCTCCCACAGAGGGCGGCGTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4590090‑4589939‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcCGGATCCCAAGCTATGGTGTAACCCAATTTCAAGAACAAGAAGGTGCCCCAGCATGCATTACCCCTCCCTGAACTTCGCCCTGGGCGAGACCATCGACATGCTCCGCGACCAGGTGCGCACCTTCGTCGCCGCTGAACTGGCCCCAAGG > NC_002947/4590051‑4590199 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |