| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4756915 = | 149 (0.910) | 10 (0.060) | 6/254 | NT | 6.6% | coding (189/1965 nt) | pvdT | pyoverdine ABC transporter ATP‑binding protein/permease |
| ? | NC_002947 | 4756941 = | 144 (0.920) | coding (215/1965 nt) | pvdT | pyoverdine ABC transporter ATP‑binding protein/permease | |||||
ATGGCTGGCATCTCGACGTTTTCCTGGGCTGAGCCGGAGGGGATCAGGTGGTAGCCCTGGAACACGAACCCGAAGGCCTCGCGGCGCAGCCAGGCCAGTTCGTCGCTGTCCAGCTCGGCAACGTCCTTGCCGGCGAAGCGGTAGCTGCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4757067‑4756915‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggcaAGGACGTTGCCGAGCTGGACAGCGACGAACTGGCCTGGCTGCGCCGCGAGGCCTTCGGGTTCGTGTTCCAGGGCTACCACCTGATCCCCTCCGGCTCAGCCCAGGAAAACGTCGAGATGCCAGCCATCTACGCCGGTACCCCAGCCGCC > NC_002947/4756941‑4757089 ATGGCTGGCATCTCGACGTTTTCCTGGGCTGAGCCGGAGGGGATCAGGTGGTAGCCCTGGAACACGAACCCGAAGGCCTCGCGGCGCAGCCAGGCCAGTTCGTCGCTGTCCAGCTCGGCAACGTCCTTGCCGGCGAAGCGGTAGCTGCCG > 2:4241323/1‑150 TGGCTGGCATCTCGACGTTTTCCTGGGCTGAGCCGGAGGGGATCAGGTGGTAGCCCTGGAACACGAACCCGAAGGCCTCGCGGCGCAGCCAGGCCAGTTCGTCGCTGTCCAGCTCGGCAACGTCCTTGCCGGCGAAGCGGTAGCTGCCGG < 1:867422/150‑1 GGCTGGCATCTCGACGTTTTCCTGGGCTGAGCCGGAGGGGATCAGGTGGTAGCCCTGGAACACGAACCCGAAGGCCTCGCGGCGCAGCCAGGCCAGTTCGTCGCTGTCCAGCTCGGCAACGTCCTTGCCGGCGAAGCGGTAGCTGCCGGC > 1:1204218/1‑150 GGCTGGCATCTCGACGTTTTCCTGGGCTGAGCCGGAGGGGATCAGGTGGTAGCCCTGGAACACGAACCCGAAGGCCTCGCGGCGCAGCCAGGCCAGTTCGTCGCTGTCCAGCTCGGCAACGTCCTTGCCGGCGAAGCGGTAGCTGCCGGC > 2:2019690/1‑150 TGGCATCTCGACGTTTTCCTGGGCTGAGCCGGAGGGGATCAGGTGGTAGCCCTGGAACACGAACCCGAAGGCCTCGCGGCGCAGCCAGGCCAGTTCGTCGCTGTCCAGCTCGGCAACGTCCTTGCCGGCGAAGCGGTAGCTGC < 1:3178349/143‑1 TGGCATCTCGACGTTTTCCTGGGCTGAGCCGGAGGGGATCAGGTGGTAGCCCTGGAACACGAACCCGAAGGCCTCGCGGCGCAGCCAGGCCAGTTCGTCGCTGTCCAGCTCGGCAACGTCCTTGCCGGCGAAGCGGTAGCTGC > 2:3178349/1‑143 CTTGCCGGCGAAGCGGTAGCTGCCGGCAAGGACGTTGCCGAGCTGGACAGCGACGAACTGGCCTGGCTGCGCCGCGAGGCCTTCGGGTTCGTGTTCCAGGGCTACCACCTGATCCCCTCCGGCTCAGCCCAGGAAAACGTCGAGATGCCA > 2:3635929/1‑150 CTTGCCGGCGAAGCGGTAGCTGCCGGCAAGGACGTTGCCGAGCTGGACAGCGACGAACTGGCCTGGCTGCGCCGCGAGG > 2:973659/1‑79 CTTGCCGGCGAAGCGGTAGCTGCCGGCAAGGACGTTGCCGAGCTGGACAGCGACGAACTGGCCTGGCTGCGCCGCGAGG < 1:973659/79‑1 GCCGGCGAAGCGGTAGCTGCCGGCAAGGACGTTGCCGAGCTGGACAGCGACGAACTGGCCTGGCTGCGCCGCGAGGCCTTC < 1:1403035/81‑1 GCCGGCGAAGCGGTAGCTGCCGGCAAGGACGTTGCCGAGCTGGACAGCGACGAACTGGCCTGGCTGCGCCGCGAGGCCTTC < 1:1403121/81‑1 GCCGGCGAAGCGGTAGCTGCCGGCAAGGACGTTGCCGAGCTGGACAGCGACGAACTGGCCTGGCTGCGCCGCGAGGCCTTC > 2:1403121/1‑81 GCCGGCGAAGCGGTAGCTGCCGGCAAGGACGTTGCCGAGCTGGACAGCGACGAACTGGCCTGGCTGCGCCGCGAGGCCTTC > 2:1403035/1‑81 CCGGCGAAGCGGTAGCTGCCGGCAAGGACGTTGCCGAGCTGGACAGCGACGAACTGGCCTGGCTGCGCCGCGAGGCCTTCGGGTTCGTGTTCCAGGGCTACCACCTGATCCCCTCCGGCTCAGCCCAGGAAAACGTCGAGATGCCAGCCA > 1:1344956/1‑150 GCGGTAGCTGCCGGCAAGGACGTTGCCGAGCTGGACAGCGACGAACTGGCCTGGCTGCGCCGCGAGGCCTTCGGGTTCGTGTTCCAGGGCTACCACCTGATCCCCTCCGGCTCAGCCCAGGAAAACGTCGAGATGCCAGCCATCTACGCC > 1:5062464/1‑150 GCGGTAGCTGCCGGCAAGGACGTTGCCGAGCTGGACAGCGACGAACTGGCCTGGCTGCGCCGCGAGGCCTTCGGGTTCGTGTTCCAGGGCTACCACCTGATCCCCTCCGGCTCAGCCCAGGAAAACGTCGAGATGCCAGCCATCTACGCC > 1:5062447/1‑150 CCGGCAAGGACGTTGCCGAGCTGGACAGCGACGAACTGGCCTGGCTGCGCCGCGAGGCCTTCGGGTTCGTGTTCCAGGGCTACCACCTGATCCCCTCCGGCTCAGCCCAGGAAAACGTCGAGATGCCAGCCATCTACGCCGGTACCCCAG > 1:4933636/1‑150 CGGCAAGGACGTTGCCGAGCTGGACAGCGACGAACTGGCCTGGCTGCGCCGCGAGGCCTTCGGGTTCGTGTTCCAGGGCTACCACCTGATCCCCTCCGGCTCAGCCCAGGAAAACGTCGAGATGCCAGCCATCTACGCCGGTACCCCAGC > 2:4853537/1‑150 GGCAAGGACGTTGCCGAGCTGGACAGCGACGAACTGGCCTGGCTGCGCCGCGAGGCCTTCGGGTTCGTGTTCCAGGGCTACCACCTGATCCCCTCCGGCTCAGCCCAGGAAAACGTCGAGATGCCAGCCATCTACGCCGGTACCCCAGCC > 1:5060038/1‑150 GGCAAGGACGTTGCCGAGCTGGACAGCGACGAACTGGCCTGGCTGCGCCGCGAGGCCTTCGGGTTCGTGTTCCAGGGCTACCACCTGATCCCCTCCGGCTCAGCCCAGGAAAACGTCGAGATGCCAGCCATCTACGCCGGTACCCCAGCC < 1:4465052/150‑1 AAGGACGTTGCCGAGCTGGACAGCGACGAACTGGCCTGGCTGCGCCGCGAGGCCTTCGGGTTCGTGTTCCAGGGCTACCACCTGATCCCCTCCGGCTCAGCCCAGGAAAACGTCGAGATGCCAGCCATCTACGCCGGTACCCCAGCCGCC < 1:3560296/150‑1 AAGGACGTTGCCGAGCTGGACAGCGACGAACTGGCCTGGCTGCGCCGCGAGGCCTTCGGGTTCGTGTTCCAGGGCTACCACCTGATCCCCTCCGGCTCAGCCCAGGAAAACGTCGAGATGCCAGCCATCTACGCCGGTACCCCAGCCGCC > 1:1356041/1‑150 ATGGCTGGCATCTCGACGTTTTCCTGGGCTGAGCCGGAGGGGATCAGGTGGTAGCCCTGGAACACGAACCCGAAGGCCTCGCGGCGCAGCCAGGCCAGTTCGTCGCTGTCCAGCTCGGCAACGTCCTTGCCGGCGAAGCGGTAGCTGCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4757067‑4756915‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggcaAGGACGTTGCCGAGCTGGACAGCGACGAACTGGCCTGGCTGCGCCGCGAGGCCTTCGGGTTCGTGTTCCAGGGCTACCACCTGATCCCCTCCGGCTCAGCCCAGGAAAACGTCGAGATGCCAGCCATCTACGCCGGTACCCCAGCCGCC > NC_002947/4756941‑4757089 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |