New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4891562	44 (0.270)	7 (0.050)	5/214	NT	14.0%	intergenic (+41/‑112)	hyi/glxR	hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase
	?	NC_002947	= 4891599	51 (0.390)					intergenic (+78/‑75)	hyi/glxR	hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase

GCGAGATCAACTACCGCTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4891388‑4891562 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctgtgggagcgggctcgcccgcgaaGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGGTGGTGGTCAGCGGCTTGTACTCCGCG  <  NC_002947/4891599‑4891452                                                                                                                                                                                                                                                                                                                                     GCGAGATCAACTACCGCTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACC                                                                                                                                                                               >  2:3596703/1‑150       TCAACTACCGCTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGG                                                                                                                                                                         <  2:330374/150‑1        CAACTACCGCTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGG                                                                                                                                                                        >  1:3271216/1‑150         AACTACCGCTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGt                                                                                                                                                                       <  1:3179351/150‑2         AACTACCGCTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGA                                                                                                                                                                       >  1:1502578/1‑150         AACTACCGCTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGA                                                                                                                                                                       <  1:2729371/150‑1           CTACCGCTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGC                                                                                                                                                                     >  1:1365115/1‑150            TACCGCTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCG                                                                                                                                                                    >  1:2097156/1‑150              CCGCTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGG                                                                                                                                                                  <  2:2009565/150‑1              CCGCTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGG                                                                                                                                                                  <  2:2013805/150‑1                 CTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGggc                                                                                                                                                               >  1:2378879/1‑147                     CTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGGTCGCCC                                                                                                                                                           >  1:976705/1‑150                           GAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAAG                                                                                                                                                     >  2:1310240/1‑150                                       CGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGC                                                                                                                                                         <  1:2637403/134‑1                                       CGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGC                                                                                                                                                         >  2:2637403/1‑134                                                 ACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGA                                                                                                                                                       <  2:2080712/126‑1                                                 ACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGA                                                                                                                                                       >  1:2080712/1‑126                                                                GCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGT                                                                                                                >  2:2270623/1‑150                                                                       GTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGG                                                                                                         <  2:1365115/150‑1                                                                        TACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACACCTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGC                                                                                                        <  1:2270623/150‑1                                                                        TACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGC                                                                                                        <  2:364742/150‑1                                                                        TACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGC                                                                                                        <  2:4502404/150‑1                                                                                                                TGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGA                                                                                                      >  2:1857508/1‑112                                                                                                                TGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGA                                                                                                      <  1:1857508/112‑1                                                                                                                                                     CCCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGGT                           >  2:4889275/1‑150                                                                                                                                                      CCTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGCTGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGAGTGCGTGGTGGGGTTTCAGCCAGCCCAGGCCCGCTTCGGTG                          >  2:226541/1‑150                                                                                                                                                       CTGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCGTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCCCAGGGTCCCGAGGTGTTCCTCAGAGTGCGTGGTGGGTTTTCAGCCAGCCCCGGCCCGCGGCGGTGG                         >  2:4363258/1‑150                                                                                                                                                        TGTGGGAGCGGGCTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGGTGGT                        <  2:3639653/150‑1                                                                                                                                                            ttcGCGGGCGAGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGGTGGTGGTC                    >  2:3271216/4‑150                                                                                                                                                                    cgCGCCCGCGAAGCAGACAACTCGGTGGCTGGCACCGGCTTTGCGGGTGTGCGCGGGCGCGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGGTGGTGGTCAGCGGCTT            <  1:4349246/148‑1                                                                                                                                                                    ccCGCCCGCGACGCAGACACCTCGGTGGAGGGCACGGGCTTTGCCGGTGTGCGCGGGCGCGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGGTGGTGGTCAGCGGCTT            <  1:2389700/148‑1                                                                                                                                                                    CTCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGGTGGTGGTCAGCGGCTT            >  1:22151/1‑150                                                                                                                                                                     TCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGGTGGTGGTCAGCGGCTTG           >  1:4877527/1‑150                                                                                                                                                                     TCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGGTGGTGGTCAGCGGCTTG           >  1:2661138/1‑150                                                                                                                                                                     TCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGGTGGTGGTCAGCGGCTTG           >  1:2143282/1‑150                                                                                                                                                                     TCGCCCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGGTGGTGGTCAGCGGCTTG           >  1:1611773/1‑150                                                                                                                                                                         CCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGGTGGTGGTCAGCGGCTTGTACT       >  2:749892/1‑150                                                                                                                                                                         CCGCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGGTGGTGGTCAGCGGCTTGTACT       >  2:3484523/1‑150                                                                                                                                                                          CGCGACGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGGTGGTGGTCAGCGGCTTGTACTC      <  1:5349590/150‑1                                                                                                                                                                           GCGAAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGGTGGTGGTCAGCGGCTTGTACTCC     >  1:1152068/1‑150                                                                                                                                                                              AAGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGGTGGTGGTCAGCGGCTTGTACTCCGCG  >  1:1771423/1‑150                                                                                                                                                                                                                                                                                                                                     GCGAGATCAACTACCGCTTCCTGTTCGAACACCTGGACCGCATTGGCTACCAGGGCTGGGTGGGCGCGGAGTACAAGCCGCTGACCACCACCGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4891388‑4891562 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctgtgggagcgggctcgcccgcgaaGCAGACAACTCGGTGGATGGCACCGGCTTTGCCGGTGTTCGCGGGCGAGCCCGCTCCCACAGGGTCCCGAGTTGTTCCTCAGATTGCGTTGTGGGTTTTCAGCCAGCCCAGGCCCGCTTCGGTGGTGGTCAGCGGCTTGTACTCCGCG  <  NC_002947/4891599‑4891452

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.