| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5142268 | 164 (1.000) | 12 (0.080) | 8/254 | NT | 7.3% | intergenic (+10/+370) | PP_4524/PP_4525 | sodium‑solute symporter/LysR family transcriptional regulator |
| ? | NC_002947 | = 5142310 | 150 (0.960) | intergenic (+52/+328) | PP_4524/PP_4525 | sodium‑solute symporter/LysR family transcriptional regulator | |||||
CTTTGCCACCGCCCTGCTGTTCATGTTCCTGGACGGGCTGGAGGCCAATACGCCGATCTACTACAGCCTGGCAGTAGGGCTGGTGAGCTTTGTGGGCGTGAGCCTGGTGTCGCGCAAGTCAGTGGCGGCGGTGAAGCTGGCCTGACTGCTGTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5142114‑5142268‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtaccAGCCCTTTCGCGGGCAAGCCCGCTCCTACAAGCGAAAGGGCCGGTACAGCAGTCAGGCCAGCTTCACCGCCGCCACTGACTTGCGCGACACCAGGCTCACGCCCACAAAGCTCACCAGCCCTACTGCCAGGCTGTAGTAGATCGGCGTA < NC_002947/5142310‑5142162 CTTTGCCACCGCCCTGCTGTTCATGTTCCTGGACGGGCTGGAGGCCAATACGCCGATCTACTACAGCCTGGCAGTAGGGCTGGTGAGCTTTGTGGGCGTGAGCCTGGTGTCGCGCAAGTCAGTGGCGGCGGTGAAGCTGACCTGACTGCT < 1:5023610/150‑1 TTTGCCACCGCCCTGCTGTTCATGTTCCTGGACGGGCTGGAGGCCAATACGCCGATCTACTACAGCCTGGCAGTAGGGCTGGTGAGCTTTGTGGGCGTGAGCCTGGTGTCGCGCAAGTCAGTGGCGGCGGTGAAGCTGGCCTGACTGCTG < 2:5216420/150‑1 CCACCGCCCTGCTGTTCATGTTCCTGGACGGGCTGGAGGCCAATACGCCGATCTACTACAGCCTGGCAGTAGGGCTGGTGAGCTTTGTGGGCGTGAGCCTGGTGTCGCGCAAGTCAGTGGCGGCGGTGAAGCTGGCCTGACTGCTGTACC > 2:3010153/1‑150 GGGCTGGAGGCCAATACGCCGATCTACTACAGCCTGGCAGTAGGGCTGGTGAGCTTTGTGGGCGTGAGCCTGGTGTCGCGCAAGTCAGTGGCGGCGGTGAAGCTGGCCTGACTGCTGTACCAGCCCTTTCGCGGGCAAGCCCGCTCCTAC > 1:4000176/1‑150 CCAATACGCCGATCTACTACAGCCTGGCAGTAGGGCTGGTGAGCTTCGTGGGCGTGAGCCTGGTGTCGCGCAAGTCAGTGGCGGCGGTGAAGCTGGCCTGACTGCTGTACCAGCCCTTTCGCGGGCAAGCCCGCTCCTACAAGCGAAAGG < 2:1327445/150‑1 ATACGCCGATCTACTACAGCCTGGCAGTAGGGCTGGTGAGCTTTGTGGGCGTGAGCCTGGTGTCGCGCAAGTCAGTGGCGGCGGTGAAGCTGGCCTGACTGCTGTACCAGCCCTTTCGCGGGCAAGCCCGCTCCTACAAGCGAAAGGGCC < 2:4000176/150‑1 ACGCCGATCTACTACAGCCTGGCAGTTGGGCTGGTGAGCTTTGTGGGCGTGAGCCTGGTGTCGCGCAAGTCAGTGGCGGCGGTGAAGCTGGCCTGACTGCTGTACCAGCCCTTTCGCGGGCAAGCCCGCTCCTACAAGCGAAAGGGCCGG < 1:2959866/150‑1 TCTACTACAGCCTGGCAGTAGGGCTGGTGAGCTTTGTGGGCGTGAGCCTGGTGTCGCGCAAGTCAGTGGCGGCGGTGAAGCTGGCCTGACTGCTGTACCAGCCCTTTCGCGGGCAAGCCCGCTCCTACAAGCGAAAGGGCCGGTACAGCA < 1:2898293/150‑1 TCTACTACAGCCTGGCAGTAGGGCTGGTGAGCTTTGTGGGCGTGAGCCTGGTGTCGCGCAAGTCAGTGGCGGCGGTGAAGCTGGCCTGACTCCTGTACCAGCCCTTTCGCGGGCAAGCCCGCTCCTACAAGCGAAAGGGCCGGTACAGCA < 1:3473190/150‑1 TGAGCCTGGTGTCGCGCAAGTCAGTGGCGGCGGTGAAGCTGGCCTGACTGCTGTACCAGCCCTTTCGCGGGCAAGCCCGCTCCTACAAGCGAAAGGGCCGGTAC > 1:2858944/1‑104 TGAGCCTGGTGTCGCGCAAGTCAGTGGCGGCGGTGAAGCTGGCCTGACTGCTGTACCAGCCCTTTCGCGGGCAAGCCCGCTCCTACAAGCGAAAGGGCCGGTAC > 1:2858910/1‑104 TGAGCCTGGTGTCGCGCAAGTCAGTGGCGGCGGTGAAGCTGGCCTGACTGCTGTACCAGCCCTTTCGCGGGCAAGCCCGCTCCTACAAGCGAAAGGGCCGGTAC < 2:2858944/104‑1 TGAGCCTGGTGTCGCGCAAGTCAGTGGCGGCGGTGAAGCTGGCCTGACTGCTGTACCAGCCCTTTCGCGGGCAAGCCCGCTCCTACAAGCGAAAGGGCCGGTAC < 2:2858910/104‑1 GGCCTGACTGCTGTACCAGCCCTTTCGCGGGCAAGCCCGCTCCTACAAGCGAAAGG > 2:5030922/1‑56 GGCCTGACTGCTGTACCAGCCCTTTCGCGGGCAAGCCCGCTCCTACAAGCGAAAGG < 1:5030922/56‑1 CTGTACCAGCCCTTTCGCGGGCAAGCCCGCTCCTCCAAGCGAAAGGGCCGGTACAGCAGTCAGGCCAGCTTCACCGCCGCCACTGACTTGCGCGACACCAGGCTCACGCCCACAAAGCTCACCAGCCCTACTGCCAGGCTGTAGTAGATC < 2:3170296/150‑1 CTGTACCAGCCCTTTCGCGGGCAAGCCCGCTCCTACCAGCGAAAGGGCCGGTACAGCAGTCAGGCCAGCTTCACCGCCGCCACTGACTTGCGCGACACCAGGCTCACGCCCACAAAGCTCACCAGCCCTACTGCCAGGCTGTAGTAGATC < 2:3805751/150‑1 CTGTACCAGCCCTTTCGCGGGCAAGCCCGCTCCTACAAGCGAAAGGGCCGGTACAGCAGTCAGGCCAGCTTCACCGCCGCCACTGACTTGCGCGACACCAGGCTCACGCCCACAAAGCTCACCAGCCCTACTGCCAGGCTGTAGTAGATC > 1:4785818/1‑150 CTGTACCAGCCCTTTCGCGGGCAAGCCCGCTCCTACAAGCGAAAGGGCCGGTACAGCAGTCAGGCCAGCTTCACCGCCGCCACTGACTTGCGCGACACCAGGCTCACGCCCACAAAGCTCACCAGCCCTACTGCCAGGCTGTAGTAGATC < 2:1303586/150‑1 CTGTACCAGCCCTTTCGCGGGCAAGCCCGCTCCTACAAGCGAAAGGGCCGGTACAGCAGTCAGGCCAGCTTCACCGCCGCCACTGACTTGCGCGACACCAGGCTCACGCCCACAAAGCTCACCAGCCCTACTGCCAGGCTGTAGTAGATC < 2:3170583/150‑1 CTGTACCAGCCCTTTCGCGGGCAAGCCCGCTCCTACAAGCGAAAGGGCCGGTACAGCAGTCAGGCCAGCTTCACCGCCGCCACTGACTTGCGCGACACCAGGCTCACGCCCACAAAGCTCACCAGCCCTACTGCCAGGCTGTAGTAGATC > 1:5213884/1‑150 CTGTACCAGCCCTTTCGCGGGCAAGCCCGCTCCTACAAGCGAAAGGGCCGGTACAGCAGTCAGGCCAGCTTCACCGCCGCCACTGACTTGCGCGACACCAGGCTCACGCCCACAAAGCTCACCAGCCCTACTGCCAGGCTGTAGTAGATC > 2:659271/1‑150 TGTACCAGCCCTTTCGCGGGCAAGCCCGCTCCTACACGCGAAAGGGCCGGTACAGCAGTCAGGCCAGCTTCACCGCCGCCACTGACTTGCGCGACACCAGGCTCACGCCCACAACGCTCACCAGCCCTACTGCCAGGCTGTAGTAGATCG < 2:67408/150‑1 TGTACCAGCCCTTTCGCGGGCAAGCCCGCTCCTACAAGCGAAAGGGCCGGTACAGCAGTCAGGCCAGCTTCACCGCCGCCACTGACTTTCGCGACACCAGGCTCACGCCCACAAAGCTCACCAGCCCTACTGCCAGGCTGTAGTAGATCG < 1:2507667/150‑1 gACCAGCCCTTTCGCGGGCAAGCCCGCTCCTACAAGCGAAAGGGCCGGTACAGCAGTCAGGCCAGCTTCACCGCCGCCACTGACTTGCGCGACACCAGGCTCACGCCCACAAAGCTCACCAGCCCTACTGCCAGGCTGTAGTAGATCGGC < 2:4101496/149‑1 TACCAGCCCTTTCGCGGGCAAGCCCGCTCCTACAAGCGAAAGGGCCGGTACAGCAGTCAGGCCAGCTTCACCGCCGCCACTGACTTGCGCGACACCAGGCTCACGCCCACAAAGCTCACCAGCCCTACTGCCAGGCTGTAGTAGATCGGC < 1:4123150/150‑1 TACCAGCCCTTTCGCGGGCAAGCCCGCTCCTACAAGCGAAAGGGCCGGTACAGCAGTCAGGCCAGCTTCACCGCCGCCACTGACTTGCGCGACACCAGGCTCACGCCCACAAAGCTCACCAGCCCTACTGCCAGGCTGTAGTAGATCGGC < 1:4090292/150‑1 TACCAGCCCTTTCGCGGGCAAGCCCGCTCCTACAAGCGAAAGGGCCGGTACAGCAGTCAGGCCAGCTTCACCGCCGCCACTGACTTGCGCGACACCAGGCTCACGCCCACAAAGCTCACCAGCCCTACTGCCAGGCTGTAGTAGATCGGC < 1:4090234/150‑1 TACCAGCCCTTTCGCGGGCAAGCCCGCTCCTACAAGCGAAAGGGCCGGTACAGCAGTCAGGCCAGCTTCACCGCCGCCACTGACTTGCGCGACACCAGGCTCACGCCCACAAAGCTCACCAGCCCTACTGCCAGGCTGTAGTAGATCGGC < 1:1482917/150‑1 CCAGCCCTTTCGCGGGCAAGCCCGCTCCTACAAGCGAAAGGGCCGGTACAGCAGTCAGGCCAGCTTCACCGCCGCCACTGACTTGCGCGACACCAGGCTCACGCCCACAAAGCTCACCAGCCCTACTGCCAGGCTGTAGTAGATCGGCGT > 2:2870372/1‑150 CCAGCCCTTTCGCGGGCAAGCCCGCTCCTACAAGCGAAAGGGCCGGTACAGCAGTCAGGCCAGCTTCACCGCCGCCACTGACTTGCGCGACACCAGGCTCACGCCCACAAAGCTCACCAGCCCTACTGCCAGGCTGTAGTAGATCGGCGT > 2:1129058/1‑150 CCAGCCCTTTCGCGGGCAAGCCCGCTCCTACAAGCGAAAGGGCCGGTACAGCAGTCAGGCCAGCTTCACCGCCGCCACTGACTTGCGCGACACCAGGCTCACGCCCACAAAGCTCACCAGCCCTACTGCCAGGCTGTAGTAGATCGGCGT > 2:5053904/1‑150 CCAGCCCTTTCGCGGGCAAGCCCGCTCCTACAAGCGAAAGGGCCGGTACAGCAGTCAGGCCAGCTTCACCGCCGCCACTGACTTGCGCGACACCAGGCTCACGCCCACAAAGCTCACCAGCCCTACTGCCAGGCTGTAGTAGATCGGCGT > 2:5170250/1‑150 CAGCCCTTTCGCGGGCAAGCCCGCTCCTACAAGCGAAAGGGCCGGTACAGCAGTCAGGCCAGCTTCACCGCCGCCACTGACTTGCGCGACACCAGGCTCACGCCCACAAAGCTCACCAGCCCTACTGCCAGGCTGTAGTAGATCGGCGTA > 1:534069/1‑150 CTTTGCCACCGCCCTGCTGTTCATGTTCCTGGACGGGCTGGAGGCCAATACGCCGATCTACTACAGCCTGGCAGTAGGGCTGGTGAGCTTTGTGGGCGTGAGCCTGGTGTCGCGCAAGTCAGTGGCGGCGGTGAAGCTGGCCTGACTGCTGTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5142114‑5142268‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtaccAGCCCTTTCGCGGGCAAGCCCGCTCCTACAAGCGAAAGGGCCGGTACAGCAGTCAGGCCAGCTTCACCGCCGCCACTGACTTGCGCGACACCAGGCTCACGCCCACAAAGCTCACCAGCCCTACTGCCAGGCTGTAGTAGATCGGCGTA < NC_002947/5142310‑5142162 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |