New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5578284	151 (0.920)	9 (0.060)	5/256	NT	5.8%	coding (33/1536 nt)	PP_4906	hypothetical protein
	?	NC_002947	= 5578298	148 (0.940)					coding (47/1536 nt)	PP_4906	hypothetical protein

ACTTGCTGTCGTGGTCAGGGTAAGAGACGGGAGCTTTAAAACTCTTCTTCTACTTATCGGCAGAACTGCGCCAGACTATAGCCACTCAATGCGAAAAGCCAGTTCGGACTGATGTCAAAATGCCAATTGAAACCAAGGTGCCCACTCAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5578133‑5578284 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggccTCTAGCGTACGCGGGGCCTGAGTGGGCACCTTGGTTTCAATTGGCATTTTGACATCAGTCCGAACTGGCTTTTCGCATTGAGTGGCTATAGTCTGGCGCAGTTCTGCCGATAAGTAGAAGAAGAGTTTTAAAGCTCCCGTCTCTT  <  NC_002947/5578298‑5578154                                                                                                                                                                                                                                                                                                           ACTTGCTGTCGTGGTCAGGGTAAGAGACGGGAGCTTTAAAACTCTTCTTCTACTTATCGGCAGAACTGCGCCAGACTATAGCCACTCAATGCGAAAAGCCAGTTCGGACTGATGTCAAAATGCCAATTGAAACCAAGGTGCCCACTCAGG                                                                                                                                                     >  1:2741345/1‑150  CTTGCTGTCGTGGTCAGGGTAAGAGACGGGAGCTTTAAAACTCTTCTTCTACTTATCGGCAGAACTGCGCCAGACTATAGCCACTCAATGCGAAAAGCCAGTTCGGACTGATGTCAAAATGCCAATTGAAACCAAGGTGCCCACTCAGGC                                                                                                                                                    >  1:3496103/1‑150   TTGCTGTCGTGGTCAGGGTAAGAGACGGGAGCTTTAAAACTCTTCTTCTACTTATCGGCAGAACTGCGCCAGACTATAGCCACTCAATGCGAAAAGCCAGTTCGGACTGATGTCAAAATGCCAATTGAAACCAAGGTGCCCACTCAGGCC                                                                                                                                                   >  1:2109502/1‑150         TCGTGGTCAGGGTAAGAGACGGGAGCTTTAAAACTCTTCTTCTACTTATCGGCAGAACTGCGCCAGACTATAGCCACTCAATGCGAAAAGCCAGTTCGGACTGATGTCAAAATGCCAATTGAAACCAAGGTGCCCACCCAGGCCTCTAGC                                                                                                                                             <  2:3513629/150‑1                          GACGGGAGCTTTAAAACTCTTCTTCTACTTATCGGCAGAACTGCGCCAGACTATAGCCACTCAATGCGAAAAGCCAGTTCGGACTGATGTCAAAATGCCAATTGAAACCAAGGTGCCCACTCAGGCCTCTAGCGTACGCGGGGCCTGAGT                                                                                                                            <  1:4931511/150‑1                          GACGGGAGCTTTAAAACTCTTCTTCTACTTATCGGCAGAACTGCGCCAGACTATAGCCACTCAATGCGAAAAGCCAGTTCGGACTGATGTCAAAATGCCAATTGAAACCAAGGTGCCCACCCAGGCCTCTAGCGTACGCGGGGCCTGAGT                                                                                                                            <  1:1871924/150‑1                          GACGGGAGCTTTAAAACTCTTCTTCTACTTATCGGCAGAACTGCGCCAGACTATAGCCACTCAATGCGAAAAGCCAGTTCGGACTGATGTCAAAATGCCAATTGAAACCAAGGTGCCCACCCAGGCCTCTAGCGTACGCGGGGCCTGAGT                                                                                                                            <  1:1335013/150‑1                            CGGGAGCTTTAAAACTCGTCTTCGACTGCTCGGCAGACCTGCGCCAGACGATAGCCACCCAATGCGAAAAGCCAGTTCGGACTGATGTCAAAAAGCCACTTGACACCAAGGTGCCCACTCAGGCCTCTAGCGTACGCGGGGCCTGAGTGG                                                                                                                          <  2:2693097/150‑1                                                                                    ACTCAATGCGAAAAGCCAGTTCGGACTGATGTCAAAATGCCAATTGAAACCAAGGTGCCCACTCAGGCCTCTAGCGTACGCGGGGCCTGAGTGG                                                                                                                          >  2:374876/1‑94                                                                                    ACTCAATGCGAAAAGCCAGTTCGGACTGATGTCAAAATGCCAATTGAAACCAAGGTGCCCACTCAGGCCTCTAGCGTACGCGGGGCCTGAGTGG                                                                                                                          <  1:374876/94‑1                                                                                                           GACTGATGTCAAAATGCCAATTGAAACCAAGGTGCCCACTCAGGCCTCTAGCGTACGCGGGGCCTGAGT                                                                                                                            <  1:3550557/69‑1                                                                                                           GACTGATGTCAAAATGCCAATTGAAACCAAGGTGCCCACTCAGGCCTCTAGCGTACGCGGGGCCTGAGT                                                                                                                            >  2:3550557/1‑69                                                                                                                                                   CAGGCCTCTAGCGTACGCGGGGCCTGAGTGGGCACCTTGGTTTCAATTGGCATTTTGACATCAGTCCGAACTGGCTTTTCGCATTGAGTGGCTATAGTCTGGCGCAGTTCTGCCGATAAGTAGAAGAAGAGTTTTAAAGCTCCCGTCTCT   <  1:1517501/150‑1                                                                                                                                                    AGGCCTCTAGCGTACGCGGGGCCTGAGTGGGCACCTTGGTTTCAATTGGCATTTTGACATCAGTCCGAACTGGCTTTTCGCATTGAGTGGCTATAGTCTGGCGCAGTTCTGCCGATAAGTAGAAGAAGAGTTTTAAAGCTCCCGTCTCTa  >  2:3602168/1‑149                                                                                                                                                    AGGCCTCTAGCGTACGCGGGGCCTGAGTGGGCACCTTGGTTTCAATTGGCATTTTGACATCAGTCCGAACTGGCTTTTCGCATTGAGTGGCTATAGTCTGGCGCAGTTCTGCCGATAAGTAGAAGAAGAGTTTTAAAGCTCCCGTCTCTT  >  2:3561715/1‑150                                                                                                                                                    AGGCCTCTAGCGTACGCGGGGCCTGAGTGGGCACCTTGGTTTCAATTGGCATTTTGACATCAGTCCGAACTGGCTTTTCGCATTGAGTGGCTATAGT                                                       <  1:3416354/97‑1                                                                                                                                                    AGGCCTCTAGCGTACGCGGGGCCTGAGTGGGCACCTTGGTTTCAATTGGCATTTTGACATCAGTCCGAACTGGCTTTTCGCATTGAGTGGCTATAGT                                                       >  2:3416354/1‑97                                                                                                                                                    AGGCCTCTAGCGTACGCGGGGCCTGAGTGGGCACCTTGGTTTCAATTGGCATTTTGACATCAGTCCGAACTGGCTTTTCGCATT                                                                    <  2:435342/84‑1                                                                                                                                                    AGGCCTCTAGCGTACGCGGGGCCTGAGTGGGCACCTTGGTTTCAATTGGCATTTTGACATCAGTCCGAACTGGCTTTTCGCATT                                                                    >  1:435342/1‑84                                                                                                                                                                                                                                                                                                           ACTTGCTGTCGTGGTCAGGGTAAGAGACGGGAGCTTTAAAACTCTTCTTCTACTTATCGGCAGAACTGCGCCAGACTATAGCCACTCAATGCGAAAAGCCAGTTCGGACTGATGTCAAAATGCCAATTGAAACCAAGGTGCCCACTCAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5578133‑5578284 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggccTCTAGCGTACGCGGGGCCTGAGTGGGCACCTTGGTTTCAATTGGCATTTTGACATCAGTCCGAACTGGCTTTTCGCATTGAGTGGCTATAGTCTGGCGCAGTTCTGCCGATAAGTAGAAGAAGAGTTTTAAAGCTCCCGTCTCTT  <  NC_002947/5578298‑5578154

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.