New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6062433	99 (0.600)	24 (0.160)	7/248	NT	20.6%	intergenic (+91/+90)	PP_5311/PP_5312	signal transduction protein/hypothetical protein
	?	NC_002947	= 6062470	93 (0.610)					intergenic (+128/+53)	PP_5311/PP_5312	signal transduction protein/hypothetical protein

GAACAAGGTGCTCGAGGCCGAGAACCTGTTGCGTGAGCTGGCTTCGCAGTTCCATGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6062276‑6062433 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcccgcgaa‑ACAAGCGACG‑CGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGTCCAAAATCGCGCCAGCTGTTAGAAATTGAGCAAGACAGTTGCTCCCGCAGGCTATGTGTTAATGCTTAATGCGGTGCATGG  <  NC_002947/6062470‑6062327                                                                                                                                                                                                                                                                                                                  GAACAAGGTGCTCGAGGCCGAGAACCTGTTGCGTGAGCTGGCTTCGCAGTTCCATGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTG                                                                                                                                                            >  2:3038194/1‑150   ACAAGGTGCTCGAGGCCTAGAACCTGTTGCGTGAGCTGGCTTCGCAGTTCCATGCACCTCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCC                                                                                                                                                          <  1:3430202/150‑1    CAAGGTGCTCGAGGCCGAGAACCTGTTGCGTGAGCTGGCTTCGCAGTTCCATGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCC                                                                                                                                                         <  2:197638/150‑1      AGGTGCTCGAGGCCGAGAACCTGTTGCGTGAGCTGGCTTCGCAGTTCCATGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGC                                                                                                                                                       <  1:1943948/150‑1       GGTGCTCGAGGCCGAGAACCTGTTGCGTGAGCTGGCTTCGCAGTTCCATGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCG                                                                                                                                                      >  2:2733298/1‑150       GGTGCTCGAGGCCGAGAACCTGTTGCGTGAGCTGGCTTCGCAGTTCCATGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCG                                                                                                                                                      >  2:3113466/1‑150         TGCTCGAGGCCGAGAACCTGTTGCGTGAGCTGGCTTCGCAGTTCCATGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAA                                                                                                                                                    <  1:1002972/150‑1             CGAGGCCGAGAACCTGGTGCGTGCGCTGGCCTCGCAGTTCCAGGCACCGCATGAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCAAGCCCGCtcccaca                                                                                                                                                <  2:4871454/150‑8                                           TTCGCAGTTCCATGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAA‑ACAAGCGACG‑CGGTGCATGGCACCGGCTTCGCCG                                                                                                                >  2:4107661/1‑150                                                AGTTCCATGCACCGCATTAAGCATTAACACATCGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACCGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAA‑ACAAGCGACG‑CGGTGCGTGGCACCGGCTTCGCCGGTGTT                                                                                                           <  1:2886818/150‑1                                                 GTTCCATGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCGTGCCCGCGAA‑ACAAGCGACG‑TGGTGCATGGCACCGGCTTCGCCGGTGTTC                                                                                                          <  1:4739876/150‑1                                                    CCATGCACCTCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTAGATCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAA‑ACAAGCGACG‑CGGTGCATGGCACCGGCTTCGCCGGTGTTCGCG                                                                                                       <  2:4063535/150‑1                                                    CCATGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAA‑ACAAGCGACG‑CGGTGCATGGCACCGGCTTCGCCGGTGTTCGCG                                                                                                       <  1:4107661/150‑1                                                    CCATGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCGTGCCCGCGAA‑ACAAGCGACG‑CGGTGCATGGCACCGGCTTCGCCGGTGTTCGCG                                                                                                       <  2:1787840/150‑1                                                    CCATGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTAAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCGTGCCCGCGAA‑ACAAGCGACG‑CGGTGCATGGCACCGGCTTCGCCGGTGTTCGCG                                                                                                       <  1:1934962/150‑1                                                     CATGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCGTGCCCGCGAA‑ACAAGCGACG‑CGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGG                                                                                                      <  1:2416981/150‑1                                                     CATGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCGTGCCCGCGAA‑ACAAGCGACG‑CGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGG                                                                                                      <  1:4956763/150‑1                                                      ATGAACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCGTGCCCGCGAA‑ACAAGCGACG‑CGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGG                                                                                                     <  2:2371959/150‑1                                                      ATGAACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCGTGCCCGCGAA‑ACAAGCGACG‑CGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGG                                                                                                     <  2:5100315/150‑1                                                            CGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCGTGCCCGCGAA‑ACAAGCGACG‑CGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCC                                                                                               <  2:4873365/150‑1                                                             GCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTACCAGCTGGCGCGATTTTGGACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAAGCGACG‑CGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCC                                                                                              <  1:3653398/150‑1                                                             GCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCGTGCCCGCGAA‑ACAAGCGACG‑CGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCC                                                                                              <  2:3786302/150‑1                                                             GCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCGTGCCCGCGAA‑ACAAGCGACG‑CGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCC                                                                                              <  2:255592/150‑1                                                             GCATTAAGCATTAACACATAGCCTGCGGGAGAAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCGTGCCCGCGAA‑ACAAGCGACG‑CGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCC                                                                                              <  2:422894/150‑1                                                             GCATTAAGCATTAACACATAGCCGGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCGTGCCCGCGAA‑ACAAGCGACG‑CGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCC                                                                                              <  2:3786199/150‑1                                                             GCATTAAGAATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCGTGCCCGCGAA‑ACAAGCGACG‑CGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCC                                                                                              <  1:3653474/150‑1                                                                     CATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAA‑ACAAGCGACG‑CGGTGCATGGCACCGGCTTCGCCGGTGTTCGC                                                                                                        >  1:1323592/1‑132                                                                     CATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAA‑ACAAGCGACG‑CGGTGCATGGCACCGGCTTCGCCGGTGTTCGC                                                                                                        <  2:1323592/132‑1                                                                     CATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAA‑ACAAGCGACG‑CGGTGCATGGCACCGGCTTCGCCGGTGTTCGC                                                                                                        >  1:1323658/1‑132                                                                     CATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAA‑ACAAGCGACG‑CGGTGCATGGCACCGGCTTCGCCGGTGTTCGC                                                                                                        <  2:1323658/132‑1                                                                                                               CTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACAAGCGACG‑CGGTGCATGGCACCGGCTTCGCCGGTGTTCGCG                                                                                                       >  2:3086591/1‑92                                                                                                               CTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAACACAAGCGACG‑CGGTGCATGGCACCGGCTTCGCCGGTGTTCGCG                                                                                                       <  1:3086591/92‑1                                                                                                                                                  GCTTGCCCGCGAACACCGGCGAAGCCGGTGCCATGCACC‑GCGTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGTCCAAAATCGCGCCAGCTGTTAGAAATTGAGCAAGACAGTTGCTCCCGCAGGCTATGTGTTAATGCTTAATGCG          >  2:2723556/1‑150                                                                                                                                                    ggGCCCGCTAA‑ACAAGCGACG‑CGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGTCCAAAATCGCGCCAGCTGTTAGAAATTGAGCAAGACAGTTGCTCCCGCAGGCTATGTGTTAATGCTTAATGCGGTG       <  2:1518064/148‑1                                                                                                                                                     TGCCCGCGAA‑ACAAGCGACG‑CGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGTCCAAAATCGCGCCAGCTGTTAGAAATTGAGCAAGACAGTTGCTCCCGCAGGCTATGTGTTAATGCTTAATGCGGTGC      <  1:4855902/150‑1                                                                                                                                                       CCCGCGAA‑ACAAGCGACG‑CGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGTCCAAAATCGCGCCAGCTGTTAGAAATTGAGCAAGACAGTTGCTCCCGCAGGCTATGTGTTAATGCTTAATGCGGTGCAT    >  2:2747846/1‑150                                                                                                                                                       CCCGCGAA‑ACAAGCGACG‑CGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGTCCAAAATCGCGCCAGCTGTTAGAAATTGAGCAAGACAGTTGCTCCCGCAGGCTATGTGTTAATGCTTAATGCGGTGCAT    <  1:2259754/150‑1                                                                                                                                                        CCGCGAA‑ACAAGCGACG‑CGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCCAGCCCGCTCCCACAGTCCAAAATCGCGCCAGCTGTTAGAAATTGAGCAAGACAGTTGCTCCCGCAGGCTATGGGTTAATGCTTAATGCGGTGCATG   >  2:2090455/1‑150                                                                                                                                                        CCGCGAA‑ACAAGCGACG‑CGGTGCATGGCACCGGCTTCGCCGGTGGTCGCGGGCAAGCCCGCTCCCACAGTCCAAAATCGCGCCAGCTGTTAGAAATTGAGCAAGACAGTTGCTCCCGCAGGCTATGTGTTAATGCTTAATGCGGTGCATG   >  2:2090448/1‑150                                                                                                                                                         CGCGAA‑ACAAGCGACG‑CGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGTCCAAAATCGCGCCAGCTGTTAGAAATTGAGCAAGACAGTTGCTCCCGCAGGCTATGTGTTAATGCTTAATGCGGTGCATGG  >  1:181625/1‑150                                                                                                                                                         CGCGAA‑ACAAGCGACG‑CGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGTCCAAAATCGCGCCAGCTGTTAGAAATTGAGCAAGACAGTTGCTCCCGCAGGCTATGTGTTAATGCTTAATG            >  1:4146798/1‑140                                                                                                                                                         CGCGAA‑ACAAGCGACG‑CGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGTCCAAAATCGCGCCAGCTGTTAGAAATTGAGCAAGACAGTTGCTCCCGCAGGCTATGTGTTAATGCTTAATG            <  2:4146798/140‑1                                                                                                                                                         CGCGAA‑ACAAGCGACG‑CGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGTCCAAAATCGCGCCAGCTGTTAGAAATTGAGCAAGACAGTTGCTCCCGCAGGCTATGTGTTAATGCTTAATG            <  2:4146860/140‑1                                                                                                                                                         CGCGAA‑ACAAGCGACG‑CGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGTCCAAAATCGCGCCAGCTGTTAGAAATTGAGCAAGACAGTTGCTCCCGCAGGCTATGTGTTAATGCTTAATG            >  1:4146860/1‑140                                                                                                                                                                                                                                                                                                                  GAACAAGGTGCTCGAGGCCGAGAACCTGTTGCGTGAGCTGGCTTCGCAGTTCCATGCACCGCATTAAGCATTAACACATAGCCTGCGGGAGCAACTGTCTTGCTCAATTTCTAACAGCTGGCGCGATTTTGGACTGTGGGAGCGGGCTTGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6062276‑6062433 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcccgcgaa‑ACAAGCGACG‑CGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGTCCAAAATCGCGCCAGCTGTTAGAAATTGAGCAAGACAGTTGCTCCCGCAGGCTATGTGTTAATGCTTAATGCGGTGCATGG  <  NC_002947/6062470‑6062327

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.