New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 353104 =111 (0.670)11 (0.080) 5/216 NT 13.8% intergenic (+68/+50) hisF/cbcV imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein
?NC_002947 6011119 = 48 (0.360)intergenic (+38/+44) norM/PP_5263 multidrug resistance protein NorM/GGDEF domain‑containing protein

Only 100 of 162 total aligned reads displayed.

GGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGTT  >  NC_002947/352955‑353253
                                                                                                                                                      |                                                                                                                                                      
ggcCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑Atctc                                                                                                                                                        >  2:1831067/1‑150 (MQ=255)
   cAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTC‑tgt                                                                                                                                                    <  1:5149496/150‑1 (MQ=255)
   cAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTC‑tgt                                                                                                                                                    <  2:1541429/150‑1 (MQ=255)
    gaccaggtgcaaggcttcctggtcagcagaccgctaccgataggggaattgatggcgtatttgctgcaggcgcctggccgccagttggagggtgtcctttagggcctcttcgcgggcacgcccgctcccacagggaccgcgcaatcC‑tgt                                                                                                                                                    >  1:636689‑M1/147‑150 (MQ=255)
    gaccaggtgcaaggcttcctggtcagcagaccgctaccgataggggaattgatggcgtatttgctgcaggcgcctggccgccagttggagggtgtcctttagggcctcttcgcgggcacgcccgctcccacagggaccgcgcaatcC‑tgt                                                                                                                                                    >  1:838570‑M1/147‑150 (MQ=255)
     gCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTC‑TGTgg                                                                                                                                                  <  2:4753544/150‑1 (MQ=255)
     gCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTC‑TGTgg                                                                                                                                                  <  2:1550314/150‑1 (MQ=255)
     accaggtgcaaggcttcctggtcagcagaccgctaccgataggggaattgatggcgtatttgctgcaggcgcctggccgccagttggagggtgtcctttagggcctcttcgcgggcacgcccgctcccccagggaccgcgcaatcC‑tgtg                                                                                                                                                   >  2:522881‑M1/146‑150 (MQ=255)
     accaggtgcaaggcttcctggtcagcagaccgctaccgataggggaattgatggcgtatttgctgcaggcgcctggccgccagttggagggtgtcctttagggcctcttcgcgggcacgcccgctcccacagggaccgcgcaatcC‑tgtg                                                                                                                                                   >  1:2051357‑M1/146‑150 (MQ=255)
     accaggtgcaaggcttcctggtcagcagaccgctaccgataggggaattgatggcgtatttgctgcaggcgcctggccgccagttggagggtgtcctttagggcctcttcgcgggcacgcccgctcccacagggaccgcgcaatcC‑tgtg                                                                                                                                                   >  2:5279106‑M1/146‑150 (MQ=255)
     accaggtgcaaggcttccgggtcagcagaccgctaccgataggggaattgagggcgtatttgctgcaggcgcctggccgccagttggagggtgtcctttagggcctcttcgcgggcacgcccgctcccacaggcaccgcgcaatcC‑tgtg                                                                                                                                                   >  1:2417620‑M1/146‑150 (MQ=255)
       aTCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTC‑TGTGGGa                                                                                                                                                <  1:4470733/150‑1 (MQ=255)
        tCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCCCAGGTTTGCTGAG‑ATCTC‑TGTGGGAg                                                                                                                                               >  2:2093918/1‑150 (MQ=255)
        tCTTCCACGTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTC‑TGTGGGAg                                                                                                                                               <  2:5202245/150‑1 (MQ=255)
        aggtgcaaggcttcctggtcagcagaccgctaccgataggggaattgctggcgtctttgctgcaggcgcctggccgccagttggagggtgtcctttagggcctcttcgcgggcacgcccgctcccacagggaccgcgcaatcC‑TGTGGGa                                                                                                                                                >  1:3916690‑M1/143‑150 (MQ=255)
          ttCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTC‑TGTGGGAGCg                                                                                                                                             >  2:50850/1‑150 (MQ=255)
          ttCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCGTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTC‑TGTGGGAGCg                                                                                                                                             <  2:13534/150‑1 (MQ=255)
          ttCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGACTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTGCTCGGGCACGCCCGCTCCCACAGGGTTGCTGAG‑AGCTC‑GGTGGGAGCg                                                                                                                                             >  1:1659936/1‑150 (MQ=39)
           tCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTC‑TGTGGGAGCgg                                                                                                                                            >  1:3127131/1‑150 (MQ=255)
            tgcaaggcttcctggtcagcagaccgctaccgataggggaattgatggcgtatttgctgcaggcgccgggccgccagttggagggtgtcctttagggcctcttcgcgggcacgcccgctcccacaggattgcgcggtcCCTGTGGGAGCg                                                                                                                                             >  1:4544623‑M1/139‑150 (MQ=255)
             cACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTC‑TGTGGGAGCGGGc                                                                                                                                          <  2:41760/150‑1 (MQ=255)
              aCTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACCCCCCCTCCCACAGGTTTTCTGCG‑ATATA‑TGTGGGCGCCGGCg                                                                                                                                         >  1:986492/1‑150 (MQ=38)
                 ttGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGAGAT‑CTCAGCAAACC‑TGTGGGAGCGGGCGTGc                                                                                                                                      <  1:1943013/150‑1 (MQ=21)
                 ggcttcctggtcagcagaccgctaccgagaggggaattgatggcgtatttgctgcaggcgccgggccgccagttggagggtgtcctttagggcctcttcgcgggcacgcccgctcccacaggattgcgcggtcCCTGTGGGAGCGGGCGt                                                                                                                                        >  1:3339311‑M1/134‑150 (MQ=255)
                 gcttcctggtcagcagaccgctaccgataggggaattgatggcgtatttgctgcaggcgcctggccgccagttggagggtgtcctttagggcctcttcgcgggcacgcccgctcccacagggaccgcgcaatcC‑TGTGGGAGCGGGCGTg                                                                                                                                       >  1:4675073‑M1/134‑150 (MQ=255)
                    tcctggtcagcagaccgctaccgataggggaattgatggcgtatttgctgcaggcgcctggccgccagttggagggtgtcctttagggcctcttcgcgggcacgcccgctcccacagggaccgcgcaatcC‑TGTGGGa                                                                                                                                                <  1:5193358‑M1/8‑1 (MQ=255)
                           cacaGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATGTC‑TGTGGGAGCGGGCGTGCCCGCGAAggg                                                                                                                            >  2:747955/1‑150 (MQ=255)
                                  ccGGCGGCCACGGCCTACAGGGCTTCGCGCGGGATCGTCGTTCGCTGAGCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCCCCGGTTTGCTGAG‑AGCTC‑TGGGGGCGCGGGCGTGCCCGCGAAGGGCCGCGaa                                                                                                                     <  2:2759512/150‑1 (MQ=38)
                                  ccGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGaa                                                                                                                     <  2:3518492/150‑1 (MQ=255)
                                  ccGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCGGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGaa                                                                                                                     <  2:1378511/150‑1 (MQ=255)
                                  ccGGAGGCCAAGGCCAACATGGCTTCGCGCGGGATCGTCGTTCGCTTATCCATTGACCGGGGCTGATTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACTGGTTTGCTGAG‑ATCTC‑GGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGaa                                                                                                                     <  1:1333464/150‑1 (MQ=39)
                                   cGGAGGCCACGGCCTACTTGGCTTCGCGCGGGTTCGTGGTTCGCTGATCCTTTGCCCGGGGCTGCTTTGCCGCCCTTCGCGGGCACGCCCGCTCCCACCGTTTTGCTGAG‑AGCTC‑TGTGGGTGCGGGCGTGCCCGCGAAGGGCCGCGAAg                                                                                                                    <  2:2315554/150‑1 (MQ=37)
                                    ggAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTC‑TGTgg                                                                                                                                                  <  1:4297882/119‑1 (MQ=255)
                                    ggAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTC‑TGTgg                                                                                                                                                  >  2:4297882/1‑119 (MQ=255)
                                          cAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCGTAG‑ATCTC‑AGTGGGAGCCGGCCTGCCCGCGAAAGGCCCCGAAGCGGcccc                                                                                                             >  1:2540755/1‑150 (MQ=38)
                                                  aCAGGGCTTCGCGGGGGTTCGTCGTTCGCTGATCCATTGCCGGGGGGTGATTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACTGTTTTGCTGAT‑ATCTC‑TGTGGGAGGGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCtt                                                                                                     <  1:4795548/150‑1 (MQ=37)
                                                    aTGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCa                                                                                                   >  2:2024240/1‑150 (MQ=255)
                                                        cTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTC‑TGGGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCGTCAACCg                                                                                               >  2:443386/1‑150 (MQ=255)
                                                        cTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTGTGCTGAG‑ATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCg                                                                                               >  2:443533/1‑150 (MQ=255)
                                                         ttCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCCCACCCACAGGGGTGCGGAG‑ATCTC‑GGTGGGAGCGGGCGTGCCCCCGAAGGGCCGCGAAGCGGCCCCAATTGCAGCAACCgg                                                                                              >  1:4415131/1‑149 (MQ=37)
                                                         ggcgtatttgctgcaggcgcctggccgccagttggagggtgtcctttagggcctcttcgcgggcacgcccgctcccaccgggaccgcgcaatcC‑TGTGGGa                                                                                                                                                <  1:2185352‑M1/8‑1 (MQ=255)
                                                         ggcgtatttgctgcaggcgcctggccgccagttggagggtgtcctttagggcctcttcgcgggcacgcccgctcccacagggaccgcgcaatcC‑TGTGGGa                                                                                                                                                >  2:2185352‑M1/94‑101 (MQ=255)
                                                          tCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTg                                                                                             <  2:2162126/150‑1 (MQ=255)
                                                                       tcgtTCGCTGATCCATTGACCGGGGCTGCTGTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGagc                                                                                <  2:4695193/150‑1 (MQ=255)
                                                                               tGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTg                                                                        >  2:3084293/1‑150 (MQ=255)
                                                                                  tCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTa                                                                     <  2:1071921/150‑1 (MQ=255)
                                                                                  tCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTa                                                                     <  2:1072047/150‑1 (MQ=255)
                                                                                    cATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTaaa                                                                   <  2:3134859/150‑1 (MQ=255)
                                                                                    cATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCCCTCCCACAGGGTTGCTGAG‑ATCTC‑TGTGGGAGCGGGCGTGCCCGCGGAGGGCCGCGAAGCGGCCCCCATTGCTTCAACCGGGGTTCTTGCCGAGCCGCGCGTGGTaaa                                                                   >  2:136433/1‑150 (MQ=38)
                                                                                      ttGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGc                                                                 >  2:4252111/1‑150 (MQ=255)
                                                                                       ggccgggggCTGCTTTCCACCCCTTCGGGGCCCCCCCCGCCCCCACCGGTTTGCTCAG‑ATCTC‑GGGGGGTGGGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCt                                                                <  1:1349676/145‑1 (MQ=37)
                                                                                         cccGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACCGGTTTGCTGAG‑ATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCg                                                              <  1:2621284/149‑1 (MQ=255)
                                                                                         cccGGGGCTGCTTGGCAGCCCTTCGCGGGCACGCCCGCGCCCCCCGGTTTGCTGAG‑TTCTC‑TGTGGGCGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCg                                                              <  2:3451826/149‑1 (MQ=38)
                                                                                         cccGGGGCTGCTGGGCAGCCCTTCGCGGGCACGCCCGCTCCCACCGGTTTGCTGAG‑ATCGC‑GGGGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCg                                                              <  2:5353635/149‑1 (MQ=38)
                                                                                         cccGGGGCGGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCCCCGGTTTGCGGAG‑ATCTC‑GGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCg                                                              <  1:1230702/149‑1 (MQ=38)
                                                                                           gagggtgtcctttagggcctcttcgcgggcacgcccgctcccacagggaccgcgcaatcC‑tgtg                                                                                                                                                   <  1:3701831‑M1/5‑1 (MQ=255)
                                                                                               gctgctTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGCGGTAAAGCTCGGTATcc                                                        <  2:1971777/150‑1 (MQ=255)
                                                                                                 tgctTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACCGGTTTGCTGAG‑ATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATcccc                                                      <  2:478793/150‑1 (MQ=255)
                                                                                                 tgctTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATcccc                                                      >  2:5444587/1‑150 (MQ=255)
                                                                                                    tttGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTC‑GGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCCGCGCGTGGTAAAGCTCGGTATCCCCGAg                                                   >  1:4087735/1‑150 (MQ=255)
                                                                                                          gCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATccc                                             <  2:4478081/150‑1 (MQ=255)
                                                                                                              ttCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCccacc                                         >  1:5443607/1‑150 (MQ=255)
                                                                                                                   gggCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCt                                    >  1:3545167/1‑150 (MQ=255)
                                                                                                                      cACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTc                                 <  2:3485721/150‑1 (MQ=255)
                                                                                                                       cgcgcccgctcccacagagatctcagcaaacC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTc                                 >  2:1853807‑M1/32‑150 (MQ=255)
                                                                                                                       aCGCCCGCTCCCACAGGTTTGCTGAG‑ATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCg                                                              <  1:493210/120‑1 (MQ=255)
                                                                                                                       aCGCCCGCTCCCACAGGTTTGCTGAG‑ATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCg                                                              >  2:493210/1‑120 (MQ=255)
                                                                                                                         gCCCGCTCCCACAGGTTTGCTGAG‑ATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGtt                              >  2:2354700/1‑150 (MQ=255)
                                                                                                                         gCCCGCTCCCACAGGTTTGCTGAG‑ATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGtt                              >  1:1380772/1‑150 (MQ=255)
                                                                                                                         gCCCGCTCCCACAGGTTTGCTGAG‑ATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGtt                              >  1:1380983/1‑150 (MQ=255)
                                                                                                                         gCCCGCTCCCACAGGTTTGCTGAG‑ATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGtt                              >  1:1381119/1‑150 (MQ=255)
                                                                                                                            ccgctcccacagagatctcagcaaacC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTAt                            <  1:1234430‑M1/124‑1 (MQ=255)
                                                                                                                              gctcccacagagatctcagcaaacC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTaaa                                                                   >  1:4866498‑M1/25‑109 (MQ=255)
                                                                                                                              gctcccacagagatctcagcaaacC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTaaa                                                                   <  2:4866498‑M1/85‑1 (MQ=255)
                                                                                                                              cTCCCACAGGTTTGCTGAG‑ATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCt                         >  2:2488996/1‑150 (MQ=255)
                                                                                                                              cTCCCACAGGTTTGCTGAG‑ATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAAGTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCt                         >  2:3811753/1‑150 (MQ=255)
                                                                                                                               tCCCACAGGTTTGCTGAG‑ATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTg                        >  2:1123229/1‑150 (MQ=255)
                                                                                                                                tcccacagagatctcagcaaacC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTg                        <  1:988953‑M1/128‑1 (MQ=255)
                                                                                                                                cccACAGGTTTGCTGAG‑ATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTgc                       >  2:2820819/1‑150 (MQ=255)
                                                                                                                                cccACAGGTTTGCTGAG‑ATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTgc                       >  1:5226010/1‑150 (MQ=255)
                                                                                                                                 ccACAGGTTTGCTGAG‑ATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTgca                      >  2:4026164/1‑150 (MQ=255)
                                                                                                                                 ccACAGGTTTGCTGAG‑ATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTgca                      <  1:3330462/150‑1 (MQ=255)
                                                                                                                                 ccACAGGTTTGCTGAG‑ATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTgca                      >  2:2369734/1‑150 (MQ=255)
                                                                                                                                 ccACAGGTTTGCTGAG‑ATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTgca                      >  2:4203851/1‑150 (MQ=255)
                                                                                                                                  cacaGGTTTGCTGAG‑ATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCg                                                              >  1:4466304/1‑109 (MQ=255)
                                                                                                                                  cacaGGTTTGCTGAG‑ATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTgcag                     >  1:2812407/1‑150 (MQ=255)
                                                                                                                                    caGGTTTGCTGAG‑ATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTgcagca                   >  2:4553121/1‑150 (MQ=255)
                                                                                                                                     cggTTTGCTGAG‑ATCGG‑TGGGGGCGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGAAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCAc                  <  1:1828205/149‑1 (MQ=39)
                                                                                                                                             tGAG‑ATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCttgt          >  2:465949/1‑150 (MQ=255)
                                                                                                                                             tGAG‑ATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCttgt          >  2:4696688/1‑150 (MQ=255)
                                                                                                                                             tGAG‑ATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCttgt          >  2:4286620/1‑150 (MQ=255)
                                                                                                                                             tGAG‑ATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCttgt          >  1:4541559/1‑150 (MQ=255)
                                                                                                                                              gag‑aTCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCttgtt         >  1:5063679/1‑150 (MQ=255)
                                                                                                                                                  aTCTC‑TGTAGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGcc      >  2:709777/1‑150 (MQ=255)
                                                                                                                                                    ctc‑tGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCgg    <  2:40101/150‑1 (MQ=255)
                                                                                                                                                     tc‑tGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTg                                                                        <  1:630004/81‑1 (MQ=255)
                                                                                                                                                     tc‑tGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGt   >  1:2827714/1‑150 (MQ=255)
                                                                                                                                                     tc‑tGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGt   >  2:818832/1‑150 (MQ=255)
                                                                                                                                                     tc‑tGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCACCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGt   >  2:4629667/1‑150 (MQ=255)
                                                                                                                                                      C‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGtt  >  2:439821‑M1/1‑150 (MQ=255)
                                                                                                                                                      |                                                                                                                                                      
GGCCAGCATCTTCCACTTTGGCGAGTACACAGTGCCGGAGGCCAAGGCCTACATGGCTTCGCGCGGGATCGTCGTTCGCTGATCCATTGACCGGGGCTGCTTTGCAGCCCTTCGCGGGCACGCCCGCTCCCACAGGTTTGCTGAG‑ATCTC‑TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGTT  >  NC_002947/352955‑353253

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.