Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,531,273 T→C 7.5% intergenic (+33/+15) lpxC → / ← PP_1344 UDP‑3‑O‑[3‑hydroxymyristoyl] N‑acetylglucosamine deacetylase/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,531,2730TC 7.5% 561.6 / 23.6 186intergenic (+33/+15)lpxC/PP_1344UDP‑3‑O‑[3‑hydroxymyristoyl] N‑acetylglucosamine deacetylase/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (108/64);  new base C (9/5);  total (117/69)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.36e-01

Only 100 of 186 total aligned reads displayed.

GAACAACCAGCTGTTGCGCAAGCTGATTGCTGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCGGCCGCATGCCCGCCACGC  >  NC_002947/1531126‑1531420
                                                                                                                                                   |                                                                                                                                                   
  acaacCAGCTGTTGCGCAAGCTGATTGCTGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCgg                                                                                                                                                 <  1:4751621/150‑1 (MQ=255)
    aacCAGCTGTTGCGCAAGCTGATTGCTGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGt                                                                                                                                               <  1:586807/150‑1 (MQ=255)
        aGCTGTTGCGCAAGCTGATTGCTGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGcc                                                                                                                                           >  2:2234908/1‑150 (MQ=255)
        aGCTGTTGCGCAAGCTGATTGCTGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGcc                                                                                                                                           >  2:4301247/1‑150 (MQ=255)
         gCTGTTGCGCAAGCTGATTGCTGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCCGAAGGTGGCCt                                                                                                                                          <  2:3356708/150‑1 (MQ=255)
           tGTTGCGCAAGCTGATTGCTGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCttt                                                                                                                                        >  2:1088328/1‑150 (MQ=255)
           tGTTGCGCAAGCTGATTGCTGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCttt                                                                                                                                        >  1:1109804/1‑150 (MQ=255)
            gTTGCGCAAGCTGATTGCTGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCtttt                                                                                                                                       <  2:1734803/150‑1 (MQ=255)
            gTTGCGCAAGCTGATTGCTGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCCGAAGGTGGCCttaa                                                                                                                                       <  2:1114549/150‑3 (MQ=255)
             ttGCGCAAGCTGATTGCTGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCttttt                                                                                                                                      >  1:1996991/1‑150 (MQ=255)
               gcgcAAGCTGATTGCTGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTa                                                                                                                                    <  2:793593/150‑1 (MQ=255)
               gcgcAAGCTGATTGCTGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTACGGGTGGCCTTTTTTa                                                                                                                                    >  2:4477777/1‑150 (MQ=255)
                cgcAAGCTGATTGCTGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTAt                                                                                                                                   <  1:2903584/150‑1 (MQ=255)
                       tGATTGCTGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGc                                                                                                                            >  2:3260968/1‑150 (MQ=255)
                         aTTGCTGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGccc                                                                                                                          >  1:769108/1‑150 (MQ=255)
                         aTTGCTGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGccc                                                                                                                          >  1:411648/1‑150 (MQ=255)
                          ttGCTGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCt                                                                                                                         <  2:1936098/150‑1 (MQ=255)
                            gCTGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTgg                                                                                                                       <  2:1318380/150‑1 (MQ=255)
                            gCTGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGGACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTgg                                                                                                                       <  1:3349435/150‑1 (MQ=255)
                             cTGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTggg                                                                                                                      >  1:2664421/1‑150 (MQ=255)
                             cTGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCGCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTggg                                                                                                                      >  1:2464453/1‑150 (MQ=255)
                              tGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCGCCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGc                                                                                                                     >  1:1368207/1‑150 (MQ=255)
                              tGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGc                                                                                                                     >  1:2587348/1‑150 (MQ=255)
                              tGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGc                                                                                                                     >  1:3858966/1‑150 (MQ=255)
                                aaaCCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGt                                                                                                                   >  2:1112763/1‑150 (MQ=255)
                                aaaCCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGt                                                                                                                   >  1:3484642/1‑150 (MQ=255)
                                  aCCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTgg                                                                                                                 <  2:2732528/150‑1 (MQ=255)
                                  aCCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTgg                                                                                                                 <  2:3550814/150‑1 (MQ=255)
                                    cGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGGTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGgc                                                                                                               >  2:690540/1‑150 (MQ=255)
                                     gATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGgcc                                                                                                              >  2:4815930/1‑150 (MQ=255)
                                       tGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGgccgc                                                                                                            <  2:3143195/150‑1 (MQ=255)
                                           tGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAAc                                                                                                        <  1:757688/150‑1 (MQ=255)
                                           tGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAAc                                                                                                        >  2:5402666/1‑150 (MQ=255)
                                           tGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAAc                                                                                                        >  1:2112641/1‑150 (MQ=255)
                                                 gTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTcc                                                                                                  <  1:2222866/150‑1 (MQ=255)
                                                  tGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCa                                                                                                 >  1:4037210/1‑150 (MQ=255)
                                                    gTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGt                                                                                               >  2:4250162/1‑150 (MQ=255)
                                                     tCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTg                                                                                              >  2:338496/1‑150 (MQ=255)
                                                          ttCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCa                                                                                         <  1:712125/150‑1 (MQ=255)
                                                              aaGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTCCGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCa                                                                                     >  2:1197660/1‑150 (MQ=255)
                                                              aaGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCa                                                                                     <  2:2022514/150‑1 (MQ=255)
                                                                gATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGt                                                                                   >  1:3107665/1‑150 (MQ=255)
                                                                  tGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGTTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGttt                                                                                 <  1:4312953/150‑1 (MQ=255)
                                                                     cAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTggg                                                                              <  1:551839/150‑1 (MQ=255)
                                                                      aGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTgggg                                                                             >  1:3660957/1‑150 (MQ=255)
                                                                      aGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTgggg                                                                             <  1:4223314/150‑1 (MQ=255)
                                                                      aGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTgggg                                                                             >  2:1846751/1‑150 (MQ=255)
                                                                      aGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTgggg                                                                             <  2:641166/150‑1 (MQ=255)
                                                                         aCGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCg                                                                          <  1:871932/150‑1 (MQ=255)
                                                                           ggCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGt                                                                        >  2:3601798/1‑150 (MQ=255)
                                                                                  aTCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTGTGGGGTCGGTAATGccc                                                                 >  2:2952929/1‑150 (MQ=255)
                                                                                     tcGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTcg                                                              >  2:2731216/1‑150 (MQ=255)
                                                                                     tcGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTcg                                                              >  1:1916230/1‑150 (MQ=255)
                                                                                           aTGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGgtg                                                        <  2:307160/150‑1 (MQ=255)
                                                                                                    gTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAgg                                               <  2:1838041/150‑1 (MQ=255)
                                                                                                       gCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGctc                                            >  1:969880/1‑150 (MQ=255)
                                                                                                         ggCCGTGTAAGTTCGAACACTCTCGCGTTCAGTAAGGCCACCTTCGGGGGGCCTTTTTTAGGGCTTGCCCTGGGCGTGGGCCGCCAACCGGTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGGGTCGCGCAGGCtctc                                          <  2:4750117/150‑1 (MQ=255)
                                                                                                          gCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCg                                         <  1:2670183/150‑1 (MQ=255)
                                                                                                                tAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCcgcg                                   >  1:130980/1‑150 (MQ=255)
                                                                                                                tAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCcgcg                                   >  1:4527993/1‑150 (MQ=255)
                                                                                                                  aGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCt                                 <  1:2354029/150‑1 (MQ=255)
                                                                                                                  aGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCACt                                 >  2:1708878/1‑150 (MQ=255)
                                                                                                                     tCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGtt                              <  1:3425053/150‑1 (MQ=255)
                                                                                                                     tCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGtt                              <  2:2413565/150‑1 (MQ=255)
                                                                                                                      cGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTc                             <  1:4250162/150‑1 (MQ=255)
                                                                                                                        aaCACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGa                           >  2:1058330/1‑150 (MQ=255)
                                                                                                                        aaCACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGa                           <  2:2103498/150‑1 (MQ=255)
                                                                                                                         acacTCTCGAGGTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGaa                          <  2:4386465/150‑1 (MQ=255)
                                                                                                                          cacTCTCTAGGTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGaaa                         <  1:4300893/150‑1 (MQ=255)
                                                                                                                             tctctAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCt                      >  2:2015957/1‑150 (MQ=255)
                                                                                                                             tctctAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCt                      >  1:1778392/1‑150 (MQ=255)
                                                                                                                             tctctAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCt                      >  2:4564395/1‑150 (MQ=255)
                                                                                                                             tctctAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCt                      >  1:4821820/1‑150 (MQ=255)
                                                                                                                              ctctAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTc                     >  2:1920571/1‑150 (MQ=255)
                                                                                                                               tctAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCg                    >  1:1114399/1‑150 (MQ=255)
                                                                                                                               tctAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCg                    >  2:4012403/1‑150 (MQ=255)
                                                                                                                               tctAGTACATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCg                    >  2:3320738/1‑150 (MQ=255)
                                                                                                                                   gTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCGGCCg                >  1:1201631/1‑150 (MQ=255)
                                                                                                                                    ttCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCGGCCGc               >  2:2293274/1‑150 (MQ=255)
                                                                                                                                    ttCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCGGCCGc               >  1:1338581/1‑150 (MQ=255)
                                                                                                                                    ttCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCGGCCGc               >  2:4752021/1‑150 (MQ=255)
                                                                                                                                     taaaaaaGGCCACCCGAAGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCGGCCGCa              >  2:2567514/6‑150 (MQ=255)
                                                                                                                                     taaaaaaGGCCACCCGAAGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTGTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCGGCCGCa              >  2:1679765/6‑150 (MQ=255)
                                                                                                                                      cATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTg                                >  1:3356235/1‑131 (MQ=255)
                                                                                                                                      aaaaaaGGCCACCCGAAGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGgtgt                                                       >  2:404365/5‑108 (MQ=255)
                                                                                                                                      aaaaaaGGCCACCCGAAGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGgtgt                                                       <  1:404365/104‑1 (MQ=255)
                                                                                                                                       aTTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCGGCCGCATg            >  1:4967649/1‑150 (MQ=255)
                                                                                                                                        ttAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCaa                                                                                                         >  2:617114/1‑56 (MQ=255)
                                                                                                                                        ttAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCaa                                                                                                         <  1:617114/56‑1 (MQ=255)
                                                                                                                                        ttAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCGGCCGCATGc           >  1:2878869/1‑150 (MQ=255)
                                                                                                                                        ttAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCGGCCGCATGc           >  1:2839137/1‑150 (MQ=255)
                                                                                                                                        ttAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGATTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCGGCCGCATGc           >  2:2631887/1‑150 (MQ=255)
                                                                                                                                         aaaGGCCACCCGAAGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCGGCCGCATGcc          >  1:3891884/2‑150 (MQ=255)
                                                                                                                                          aaGGCCACCTTCGGGTGGCCATTATTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCACGGCCGCGCTGTTCGAAAGCTCGGCCGCATTccc         <  2:3850554/150‑1 (MQ=255)
                                                                                                                                          aaGGCCACCCGAAGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCGGCCGCATGccc         >  1:2688862/1‑150 (MQ=255)
                                                                                                                                          aaGGCCACCCGAAGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCGGCCGCATGccc         >  1:854180/1‑150 (MQ=255)
                                                                                                                                             gCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCGGCCGCATGCCCGcc      >  2:3981095/1‑150 (MQ=255)
                                                                                                                                              ccACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCGGCCGCATGCCCGCCa     >  1:5361685/1‑150 (MQ=255)
                                                                                                                                               cACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCGGCCGCATGCCCGCCAc    >  2:3687122/1‑150 (MQ=255)
                                                                                                                                                 ccTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCGGCCGCATGCCCGCCACGc  >  1:4702990/1‑150 (MQ=255)
                                                                                                                                                   |                                                                                                                                                   
GAACAACCAGCTGTTGCGCAAGCTGATTGCTGAAACCGATGCCTGGGAAGTGGTCACTTTCGAAGATGCCAGCACGGCACCGATCTCGTACATGCGCCCTGTTGCGGCCGTGTAAGTTCGAACACTCTCTAGTTCATTAAGGCCACCTTCGGGTGGCCTTTTTTATGGCTTGCCCTGGGCGTGGGCCGCCAACCGTTCCAGTGCGGCACGCAGTTTGGGGTCGGTAATGCCCTCGGCGGTGTCGCGCAGGCTCTCGGCCGCGCTGTTCGAAAGCTCGGCCGCATGCCCGCCACGC  >  NC_002947/1531126‑1531420

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: